Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate Gr5TL1 segment M, complete sequence.
ACC No: HM015523
Dated: 2010-12-08 | Length: 4791 | CRC: -1315504779
ID HM015523; SV 1; linear; genomic RNA; STD; VRL; 4791 BP.
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AC HM015523;
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DT 08-DEC-2010 (Rel. 107, Created)
DT 08-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate Gr5TL1 segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4791
RX PUBMED; 20881087.
RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.;
RT "Evolutionary analysis of tomato Sw-5 resistance breaking isolates of
RT Tomato spotted wilt virus";
RL J. Gen. Virol. 92(1):210-215(2011).
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RN [2]
RP 1-4791
RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.;
RT ;
RL Submitted (20-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL COMAV-Universidad Politecnica de Valencia, Camino de Vera 14, Valencia
RL 46022, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .4791
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="Solanum lycopersicum"
FT /isolate="Gr5TL1"
FT /mol_type="genomic RNA"
FT /country="Spain:Barcelona"
FT /collection_date="2004"
FT /proviral
FT /note="biotype: T: Tomato Sw-5 resistance breaking"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="Nsm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="Nsm"
FT /product="putative movement protein"
FT /protein_id="ADR66489.1"
FT /translation="MLTFFSNKGSSKSAKKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPNWDSRKQHMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1300. .4707)
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="precursor of glycoproteins Gn and Gc"
FT /protein_id="ADR66490.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVETIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT
FT ISVSDLPNNCLNASSLKCEIKGVSTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA
FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG
FT PNDCIENQNCIAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSAGLYEA
FT KRLGNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCQNIYDMDKSYRIYSVL
FT KSTIVADACISGILGGQCSKITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL
FT NCNGCLLCGQGLSCILEFFSNLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRAVLLIAFIFLVIYFCSILTTICKGYVKNKSYKSRSKIVDD
FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4791 BP; 1556 A; 839 C; 846 G; 1550 T; 0 other;
hm015523 Length: 4791 08-DEC-2010 Type: N Check: 5902 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactt ttttcagcaa taaggggtct tctaagtctg ccaaaaagga
151 tgaaggtcct ttagtttcac tagctaaaca taatggtaat gtagaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaatgg gaagcagaac gctaataagg tcatcaagat
451 ctgtccaaat tgggacagca gaaaacaaca catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacagggaa acttgtggtt
551 gccctagttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg
601 tcaagggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt
651 ctattccaaa aataaacaac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaaaggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtgtggt tatacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca
901 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagt acttttaata ccacttattt aagcttaaat ttctgttaat
1051 tttgcatttt aaaatcaaaa aacaaaacaa aaaacaaaaa acaaaaagag
1101 agagaaaaaa acaaaaaaca aaaaaatcaa aaacagaaaa caaaaacaag
1151 ataaggctga aaagccaaac tttggtccga agactctttt tgttgttttt
1201 tgtttatttg tattttttgt ttgttttttg tttattttat atatacataa
1251 tctgactaat gtagaaaatt gaatcaaatt tagcctgtga caagcagcct
1301 cagacaaggt gagagaaatc cataggtggc cttcgtcttg tcattgtatc
1351 tttcattaac ataggggctt tgatctcaga atcatcatca tccactatct
1401 tggatctaga tttataagat ttattcttga catatccttt acaaatggtt
1451 gttagaatag aacagaaata aattacaagg aaaatgaatg caataagcaa
1501 taccgctctg atagtatcaa aaaacgagcc aaaataactt gcaatgaaat
1551 tgaatgggct cttaatataa tcccagaaac cccatgctga agaatcagaa
1601 ttatattgtt gttcttcatg agcatactca tcattttgat ctattatgtt
1651 ctctggttct tctacgacaa cattattgac cagaacctcc acagaaatat
1701 ctggattgcc ttctggatac aacgtcattt tcttcttgtc cggattagca
1751 gaacaaaaca ttgttatgtt gtatttattt gacccttttt taacagccag
1801 ttgataagta gatagagagc aagcatctat agaaattgaa gtagaaaatg
1851 tcaaattcga gaaaaattct aagatgcaag ataaaccttg accgcataga
1901 agacagccgt tgcaatttaa tcttgttgaa gttatggaag gtctcttagg
1951 agcaacttta aaaagatcag atggaagatc aacgacaatc ttgagtttgc
2001 ctaaactgaa agctttttcc aagaaaaaac tagagaaatc tttgaaacta
2051 acaggaatat ctgatatttg ctctaaacca gatctaaatc tgtatgtatc
2101 atatccgcat gttttaatag tgattgattt tttccctatt gctgcacaat
2151 cccaagacat gtcatctcct tctagagttt tcttagtaaa aataggcact
2201 ccatcatgag tcaattgtgg gtgaccaaac attttgacag gatcattcaa
2251 gtttgcaata tttccagaat aaatatggcc atcaggtcca tgagctatca
2301 gttcacctat agtgatacca tcattgtgca gatctgcttg tatatcagct
2351 tgaaacaagg cattttcata aggaacctct tcagtgatct ttgagcactg
2401 acctcctaaa ataccagaaa tacaggcatc tgccactata gttgatttta
2451 gcactgaata aattctgtat gatttatcca tgtcatagat attctgacag
2501 aatccacatg tagcaccttc attaattgca aaacaccaag cttcttcaca
2551 tccccaataa gaagttggtg ttatacaaaa atcttggaaa cctgttaaag
2601 cttgattttt tctgcaagtg tcacagtttc ctgtacaagt tgaataaaaa
2651 tctgtgtgag tactttggat aggggctgtt gtgtattttt ctgacacttc
2701 ataatgaatt cccacacttt tgatataaat cacaaatttt ttggctgttt
2751 ccgaggtctt atcattcaac atgaatatag tccctcctcc tcctaaaaga
2801 gattgttcta tcatgtatct atatttcccg tctacaacag aatcaaagat
2851 caatgattgt ctaggtagaa tgttctctgg tatgcttgtt tcatttttgt
2901 ttagagagtc tcctgcaatc attccagaaa ttttgtctgt acgattataa
2951 gaatctatta taccattccc caatctctta gcttcataca gaccagccga
3001 tgttaaccct aaagagcttc ctgtataatc tgaaaatcca ttatacaaag
3051 gtttgtttct aaataaatct aggtattcgc aacctaatct gcattttata
3101 agattatcga tagatgggtg tgcaatgcaa ttctggtttt ctatgcaatc
3151 attaggacct tctataacaa tgttagtgcc aaagatactt tctataatcg
3201 tatcttcttt tacattacag taacattgat ctttttcagg gcatttttca
3251 aatttgcttg taaccaaaaa cggacagcct ggaacataaa aacacccact
3301 taaacattgg gtagtttgag ccatagacat gggcatttga gacaaaatga
3351 tcaaacctat taagatttca gtcacaaatt ttagcaaact aaagctcagc
3401 ttagtgttca ctattagatg gaaccattcc atgctagtcc acttatgttt
3451 gttgtagtca tgatctgttt ctttggataa tatgggacac tctgaagaat
3501 gttcttttga agctttgctt ttgttgcaga tgcaaatttt agtacattca
3551 tgtgtgatta tgcacaaatt gccacagtta gaacatttaa atggaaaata
3601 tttccataag caatttatga gcaacaaaat agggtatgtg atcaagccta
3651 taagatcata ccagagaaag aggggtttgg ttgtcttgtt tactaaccac
3701 cggataggga aatagatcaa caaagctatc aatattaatc ttatccaaga
3751 aaaattgatg caggctgttt gtttataaat gctttttgaa tatttgatta
3801 tgcaatctct aactcttttg tttgtttttg gtattttagc tgatttgtca
3851 ccgcataaga gattgtgctc accatccaac atttcctcag taaaagtgat
3901 gcttgctgat ccagaaaaag atatgacctt gtgttccaca ttttcaccag
3951 gcttttttat caaataaccc atgatcttct cagggctagt gatgctaaca
4001 gtgtagggat tagcaaagtt tgatttagtt attttgcaat cgccagataa
4051 cttcacagtt tgtaatgata ctgttccatt agtagggtac gagttataag
4101 ttataggata attgtcttgt gtcaggcttt ctgaaatgaa gaattttgtt
4151 ccaactgaaa aatgcctttt gttgtcaagt ttagtaatgg gaataaccgg
4201 gactttagag aatctttttg gcagatttaa agaattgtca catttttcta
4251 aaccttctgc tgaatcagaa acacaggaat atatgacacc attattttcc
4301 acttgataat aaacattata agtggatacc ccttttatct cacattttaa
4351 tgaagaagca ttcaagcagt tgttaggaag atccgagaca gagatcgttt
4401 tttgcgtagt tgattcagca aaaataggga tggttgattc ttcttctcgt
4451 atctggcggg ttccaggagt ctgagattct agcatcagat tagttaaagt
4501 ctccaagata gccttgcgtt gaattgatgc agcagtgggt acttcattct
4551 cagcagaatc atcataaacc tcaggatggt ctccacgaat tgtttctact
4601 ttggcatctg tggctctgaa gatcaagaat gccaacaaga cagaactcag
4651 ggcaattgtg aaaagactca cttttaccac tagttctagt agttttaaaa
4701 ttctcatctt agacgtctgc tcagattata atggttatat gattaatttc
4751 aagatgtctg gattaaggtt tttgtttgca ctgattgctc t