Sequence of DPV Potato virus Y

Potato virus Y strain N isolate KZN polyprotein-like gene, partial sequence.

ACC No: HM034306

Dated: 2010-06-27 | Length: 2559 | CRC: -1352731553

                
ID   HM034306; SV 1; linear; genomic RNA; STD; VRL; 2559 BP.
XX
AC   HM034306;
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DT   27-JUN-2010 (Rel. 105, Created)
DT   27-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE   Potato virus Y strain N isolate KZN polyprotein-like gene, partial
DE   sequence.
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KW   .
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OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-2559
RA   Ibaba J.D., Gubba A.;
RT   "Phylogenetic studies of PVY isolates infecting solanaceous vegetables in
RT   Kwazulu-Natal (KZN), Republic of South Africa";
RL   Unpublished.
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RN   [2]
RP   1-2559
RA   Ibaba J.D., Gubba A.;
RT   ;
RL   Submitted (25-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, University of Kwazulu-Natal, Agric, Pieterma,
RL   Kwazulu-Natal 3209, Republic of South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2559
FT                   /organism="Potato virus Y"
FT                   /host="potato"
FT                   /strain="N"
FT                   /isolate="KZN"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /collection_date="May-2008"
FT                   /db_xref="taxon:12216"
FT   5'UTR           1. .189
FT   misc_feature    190. .>2559
FT                   /note="similar to polyprotein"
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SQ   Sequence 2559 BP; 817 A; 503 C; 580 G; 659 T; 0 other;

hm034306 Length: 2559  27-JUN-2010  Type: N  Check: 112  ..

       1  aaattaaaac aactcaatac aacataagaa aatcaacgca aaaacactca
      51  caaaagcttt caactctaat tcaaacaatt tgttaagttt caatttcgat
     101  cttcatcaaa caaactcttt caatttcagt gtaagctatc gtaatccagt
     151  aagttatttc aaactctcgt acattgcaga agatcatcca tggcaactta
     201  cacatcaaca atccagtttg gttccattga atgcaaactt ccatactcac
     251  ccgctccttt tgggctagtt gcggggaaac gagaagtttc aaccaccact
     301  gaccccttcg caagtttgga gatgcagctt agtgcgcgat tgcgaaggca
     351  agagtttgca actattcgaa aatccaagaa tggtacttgc atgtatcgat
     401  acaagactga tgtccagatt gcgcgcattc aaaagaagcg cgaggaaaga
     451  gaaagagagg aatataattt ccaaatggct gcgtcaagtg ttgtgtcgaa
     501  gatcactatt gctggtggag agccaccttc aaaacttgaa tcacaagtgc
     551  ggaggggtgt catccacaca actccaagga tgcgcacagc aaaaacatat
     601  cacacgccaa agttgacaga gggacaaatg aaccacctta tcaagcaggt
     651  gaagcaaatt atgtcaacca aaggagggtc tgttcagctg attagcaaga
     701  aaagtaccca tgttcactat aaagaagttt tgggatcaca tcgcgcagtc
     751  gtttgcactg cacatatgaa aggtttacga aagagagtgg actttcggtg
     801  tgataaatgg accgttgtgc gtctacagca tctcgccagg acggacaagt
     851  ggactaacca agttcgtgct actgatctac gcaagggtga tagtggagtt
     901  atattgagta ataccaatct caaaggaaac tttgggagaa gctcggaggg
     951  cctattcata gtgcgtgggt cgcacgaagg aaaaatctat gatgcacgtt
    1001  ccaaggttac tcaaggggtt atggattcaa tggttcagtt ctcaagcgct
    1051  gaaagctttt ggaagggatt ggacggcaat tgggcacaaa tgagatatcc
    1101  tacagatcat acatgtgtgg caggcttacc agttgaagac tgtggcagag
    1151  ttgcagcgat aatgacacac agtattttac cgtgctataa gataacctgc
    1201  cctacctgtg cccaacaata tgccaacttg ccagccagtg acttacttaa
    1251  gatattacac aagcacgcag gtgatggttt aaatcgattg ggggcagaca
    1301  aagatcgttt tgtgcatgtc aaaaagttct tgacaatctt agagcactta
    1351  actgaaccgg ttgatccgag tctagaaatt ttcaatgaag tattcaagtc
    1401  tataggggag aagcaacaat cacctttcaa aaacctgaat attctgaata
    1451  atttcttttt gaaaggaaag gaaaatacag ctcgtgaatg gcaggtggct
    1501  caattaagct tacttgaatt ggcaagattc caaaagaaca gaacggataa
    1551  tatcaagaaa ggagacatct cgttctttag gaataaacta tctgccaaag
    1601  caaattggaa cttgtatctg tcatgtgata accagctgga taagaatgca
    1651  aacttcctgt ggggacagag ggaatatcat gctaagcgat ttttctcaaa
    1701  ctatttcgag gaaattgatc cagcgaaggg ctattcagca tacgaaaatc
    1751  gtctgcatcc gaatgggaca agaaaacttg caattggaaa cctaatcgta
    1801  ccacttgatc tggctgagtt taggcggaag atgaaaggtg attttaaaag
    1851  acagccaggg gtgagtaaga agtgcacgag ttcgaaggat ggaaactacg
    1901  tgtatccctg ttgttgcact acacttgatg atggctcagc tgttgaatca
    1951  acattttacc cgccaactaa gaagcacctc gtaataggta atagtggcga
    2001  ccaaaagtat gttgacttac caaaagggaa ttctgagatg ttatatattg
    2051  ccaggcaagg cttctgttac attaacattt tcctcgcgat gttgattaac
    2101  attagtgagg aagacgcaaa ggatttcact aagaaggttc gtgacatgtg
    2151  tgtgccaaag cttggaacct ggccaaccat gatggatctg gctacaactt
    2201  gtgctcaaat gaaaatattc taccctgatg ttcatgatgc agaactgcct
    2251  agaatactag tcgatcacga aacgcagaca tgccatgtgg ttgactcgtt
    2301  tggctcacaa acaactgggt atcatatttt gaaagcatct agcgtgtccc
    2351  aacttatttt gtttgctaat gatgagttgg agtctgacat taagcactat
    2401  agagttggtg gtattcctgg agcatgccct gagcttgggt ccacaatatc
    2451  accttttaga gaaggaggaa tcataatgtc tgagtcggca gcgctaaaac
    2501  tgctcctaaa gggaattttt aggcccaaag tgatgtagca attgctactg
    2551  gatgaacca