Sequence of DPV Candiru virus
Chandiru virus segment L, complete sequence.
ACC No: HM119407
Dated: 2011-04-03 | Length: 6327 | CRC: -1310977163
ID HM119407; SV 1; linear; genomic RNA; STD; VRL; 6327 BP.
XX
AC HM119407;
XX
DT 03-APR-2011 (Rel. 108, Created)
DT 03-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE Chandiru virus segment L, complete sequence.
XX
KW .
XX
OS Chandiru virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus.
XX
RN [1]
RP 1-6327
RX PUBMED; 21289119.
RA Palacios G., Tesh R., Travassos da Rosa A., Savji N., Sze W., Jain K.,
RA Serge R., Guzman H., Guevara C., Nunes M.R., Nunes-Neto J.P., Kochel T.,
RA Hutchison S., Vasconcelos P.F., Lipkin W.I.;
RT "Characterization of the candiru antigenic complex (bunyaviridae:
RT phlebovirus), a highly diverse and reassorting group of viruses affecting
RT humans in tropical america";
RL J. Virol. 85(8):3811-3820(2011).
XX
RN [2]
RP 1-6327
RA Palacios G., Savji N., Sze W., Lipkin W.I.;
RT ;
RL Submitted (14-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Center for Infection and Immunity, 722 West 168th Street, New York City, NY
RL 10032, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6327
FT /organism="Chandiru virus"
FT /segment="L"
FT /host="Homo sapiens"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /collection_date="1967"
FT /db_xref="taxon:629725"
FT CDS 25. .6291
FT /codon_start=1
FT /product="L protein"
FT /protein_id="AEA30057.1"
FT /translation="MEEILNKQQIPEGVGLFRPEIKQYDDSIMDVEIPFFHITKCDGYM
FT KIDLDLNNGVDYSTIGSSLISTIEVPDKSLPNLVHDVVFSHLASSTDVRFSSVFGVYAD
FT SYDHLSPDFILKTAAGSHHVVEFTTNRGGERGAFQACKDKFSKYHIPCENRAVGGRVSL
FT FVVSVYVRGVWSNLDLTDDEVNELVFRFRLAVAIMEEAKRYYPELTEDESEMTKQEREI
FT LGIVSSIQMDWKETSLKFPHFKEKVFEDFLTMSADEEYLSGIISEEITACQEDMMESGF
FT IGKVTGIDERLKLNESECNKMIDSYLKSRGPNCRDKLDSKSTVQIPPWVMTEYLDGKSV
FT SCLSGFEVEGDHPMCKIWRSVTIAAAMGDIDRADDDPETELKKALDGSIQKSDERSRYH
FT RIKLNLSNEEIIYGATLGVEGKSHKSNAQVEESRKRSKLGFSLDHDITNLEEFINKHDL
FT ELFAESDDYFNPFQIDFDLRESAQKIHQPDLIMDQGENEFLANHKKLCMSKLGSWCQMV
FT SLIGAELSASVKQHVGKGQFVIKRVLNSPLFMLIKPTSSVSHIFVSFALVKSSHMGDLW
FT DNGVFKHYIDAGDLFITDFISYKLSKLTNLCKCFPLMESAICFWTEIFGFEPWNSTYIM
FT STDRSGSSKEAASMIKLTLLTLMEDKAVTEEIQTIQRYIIMEGFVSLPELPKPHKMLSK
FT LPAVLRSELQVYLVLRSLRTMERISRHPFRLQKKHSQISWSGLFNPLTGNSLRELQPLI
FT SICYNGYFKNKEEETEPSALSRLYKKIIELEHLCPTDDIYLGSGDPKEPKMHEFSRSFL
FT KKCTDHGKTILRKIYGQNFMQQIDTQIMREISTITLEKLATLKASSNFDEKWYDYEKCN
FT KEDYHREKAIVKMSEFAASGKTLAIEVFDECMKFVEKRGNMHICLFKKQQHGGDREIYV
FT LGREERIIQSIVEAISRSIGRFFPSDTLCNPGNKIKIPETHGIRARKHCKGAVWTCSTS
FT DDARKWNQGHFVTKFALMLCEFTLPKWWPIIIRGCSMFTNKYMMMNMRYISILSRHKEL
FT DIEDEFSRTIFKAFHGEVTVPWMDAGATFLKTKTGMMQGILHFTSSLLHTLHQEFIRSL
FT SFKIFNTKVRPEMSQSVVIDMMQGSDDSSMMISFPCSNEDQLMKCKIAAAICFRIKKRL
FT GVFLAIYPSEKSTSNTDFVMEYNSEFFFHSQHVRPTVRWIAACCNLPEVETLVARQEEA
FT SNLMTSVSEGGGSFSLAACIQQAQCTLHYMLMGMGVSSLFEEYKKAIIRWKDPGLGFFL
FT LDNPYCAGLGGFRFNLYKAIAQTPLKCLYSYFMKKVRHGLETNDGTIPESCSVSPGGAI
FT VLSSALRWGSKQKFYKLRDKLNIPEDWIDQINQNPSILYRAPRSGEEVILRIAEKVHSP
FT GVVSSLSTGNAVAKVIASSVYFLSAAIFQDSGRQEFSILDDSKYSLLQKLSKLEGINLT
FT NAISDEDLLFLFPNIEDLQSLDSLVYNRGAIEIVKRKQIKENTQSRVIVFEGNRNLRTP
FT AEYLISDKWFGTQKSKIGRTAFDQEWVKVTSIIPWLRESPQETLQSSPLDNHIQIRNFF
FT SRMDQKPRVVRVTGAPIKKRSGVSKLSMVIRDNFSKLGFIRDIEDITGTSRTNSAELLK
FT HFMFCALQGPYSQERKLQMVIDLLNKSNPIGIKDSDGKSRSNILAILQSYVYREPHIAR
FT QIEDAGAGIIGGFVVPQKPKKIENTIYYYGYGVWRGVMDGKQVQIELDNAVGSPPVIIS
FT VTMEESAEPWQICKSIRSWAEDVGAKNNLDISPKIKKRTCKYWMFDFKTFSSDKAYGAP
FT VYMTKKKMVDFRLIDDAEISIKVRKSTVNLYVRSDGRDVHILSYSASDSDLSPASLRIN
FT DESKDEMMELFNKEPSKSWASCSPIPAIMMHKIIKVVQGELKISSLDSGRLGEIMKLCC
FT ESSLRSRIGTLFSALPSVQNTSRVDVDDLIDIVLTDSKTAGFREIVQSLENDIKDEYEV
FT EDFDLSDIDLFGPAHYKELSDLNTISHPLMDDYVEFCISTVGRKELRRILETNRCKTKD
FT LQLSKDLFLVLGRNPDDIKVDEYNLREQMAVEDDMIG"
XX
SQ Sequence 6327 BP; 2089 A; 1088 C; 1395 G; 1755 T; 0 other;
hm119407 Length: 6327 03-APR-2011 Type: N Check: 1032 ..
1 gaaacacaca aagaagccca aactatggaa gaaatactaa acaaacaaca
51 aatccccgag ggggtaggat tgtttagacc agagataaag caatacgatg
101 attctatcat ggatgttgag ataccattct tccacataac taagtgtgat
151 ggatacatga aaatagattt ggatctaaat aacggtgttg attattccac
201 tattgggtca tcattgatat ccaccattga agttccagat aagtctcttc
251 ccaatcttgt ccatgatgtg gtcttctcac atcttgccag cagcactgat
301 gtgaggttct catcagtgtt tggagtgtat gctgattctt atgatcatct
351 gtcccctgac ttcattctaa aaacagctgc cggatctcat catgttgttg
401 aatttacgac taacaggggt ggagagagag gggcttttca ggcatgcaaa
451 gacaagtttt ctaaatatca cattccttgt gagaatagag ctgttggagg
501 cagggtatct ctttttgtag tttctgttta tgttaggggt gtgtggtcaa
551 atcttgattt aacagatgat gaagtcaatg aacttgtgtt tagatttaga
601 ctggcagtgg ccataatgga ggaggcaaaa agatactatc ctgaattaac
651 agaagatgaa agtgagatga ccaagcaaga gagagaaatt cttggtattg
701 tgtcttcaat acaaatggac tggaaagaga ctagcctgaa gtttccacac
751 ttcaaagaaa aagtatttga ggatttcttg acaatgtctg cagatgagga
801 atatctctct ggcataatat ctgaggagat taccgcatgt caagaggata
851 tgatggaatc aggattcatt gggaaagtga caggcattga tgagaggctc
901 aaactgaatg aatcagagtg taataaaatg attgacagtt acttgaagag
951 tagaggaccc aactgcagag acaaattgga tagtaaatcc acagtccaga
1001 ttccgccatg ggtgatgact gagtatttag atgggaaatc tgtgtcttgt
1051 ttgtcaggat tcgaagtaga gggagatcac ccgatgtgca aaatatggag
1101 atccgtcaca atcgcagctg ctatgggtga catagatcgt gctgatgatg
1151 atcctgagac tgagctcaaa aaggccttag atggcagcat acaaaagagt
1201 gatgagagaa gtagatatca tcgtataaaa ctaaatttat ctaatgaaga
1251 gataatttat ggtgcaactt tgggtgttga agggaaatct cataaaagca
1301 atgcccaagt tgaagagtcg agaaagagaa gcaaacttgg attttctcta
1351 gaccacgaca ttacaaactt ggaagaattt attaataaac atgatcttga
1401 gttatttgca gaatccgatg attattttaa ccctttccag attgactttg
1451 acctgagaga gtcagctcag aagatacatc agccagactt gatcatggac
1501 caaggtgaaa atgagttcct agcaaaccac aagaaattgt gcatgtctaa
1551 gctaggctct tggtgtcaaa tggtttcact gattggtgcg gaattatcag
1601 catcagttaa acagcatgtg gggaaaggac aatttgtgat caaaagagta
1651 ttgaattctc ctcttttcat gctaatcaaa cccacatctt ctgttagtca
1701 tatttttgtt tcttttgcac tcgtgaaatc tagtcacatg ggagatctgt
1751 gggataatgg tgtcttcaag cattacatcg atgcaggaga cttgttcatc
1801 actgatttta tttcttacaa gcttagcaaa ctgaccaatc tttgtaagtg
1851 tttccctctt atggagagtg caatctgttt ctggactgaa atatttggtt
1901 ttgagccttg gaattccaca tacataatgt ctacagacag gagtgggagt
1951 tcaaaagaag cagcttcaat gatcaaactg actctgctaa cacttatgga
2001 agataaagca gtcactgaag agattcagac cattcaaaga tacataatta
2051 tggaagggtt cgtttctttg ccagaactgc caaaaccaca caaaatgttg
2101 tcaaaactac cagctgtgct aaggtcagag ttgcaagtgt atctagtctt
2151 aaggtctctg agaacaatgg aaagaatatc tagacatcct tttaggctgc
2201 agaaaaaaca tagccaaatc tcctggtcag ggctgttcaa tcctttaact
2251 ggaaactccc tcagggagct ccaaccacta attagcatat gttataatgg
2301 atatttcaaa aacaaggagg aagaaactga accctctgca ttatcaagat
2351 tatacaagaa aattattgaa ctagagcatc tatgcccaac tgatgacatc
2401 tatttaggat caggcgaccc aaaagagcca aagatgcatg agtttagcag
2451 gtcatttcta aaaaaatgta ctgatcatgg gaaaaccata ttaagaaaaa
2501 tctatggtca gaattttatg cagcagatag acactcagat tatgagggag
2551 attagtacca tcactcttga aaaacttgca acattgaaag ctagtagtaa
2601 ttttgatgag aagtggtatg actatgagaa gtgcaacaaa gaagactatc
2651 atcgtgagaa ggctattgtt aagatgtctg aatttgctgc atctgggaag
2701 acattagcta tagaagtctt tgatgaatgt atgaaatttg tggagaaaag
2751 aggcaacatg cacatctgtc tttttaagaa gcaacagcat ggtggagata
2801 gggagattta tgtcttgggt agagaagaaa gaataattca atctatagtt
2851 gaggcaatat ctaggtcaat tggtagattc tttccctcag atactctgtg
2901 caatcctggc aacaagatta aaatacctga aacacacgga ataagagcta
2951 gaaaacactg taaaggtgct gtgtggactt gttccacatc tgatgacgct
3001 aggaaatgga atcaaggtca ctttgttaca aaatttgctt taatgctgtg
3051 cgagttcacc cttcctaaat ggtggccaat catcattagg ggatgctcga
3101 tgttcaccaa caaatacatg atgatgaaca tgaggtatat cagcatttta
3151 agcaggcaca aggaattgga tattgaagat gagttttcta gaactatatt
3201 caaagctttt catggtgagg tgacagtgcc atggatggat gcaggggcca
3251 cctttctgaa aacaaaaaca gggatgatgc aagggatatt acatttcacc
3301 tcttctctct tacacacact tcaccaagaa ttcattaggt cattatcttt
3351 taaaatcttc aacaccaaag tgaggccaga aatgtcgcaa tcagtagtga
3401 ttgacatgat gcagggctct gatgatagca gcatgatgat cagcttccca
3451 tgttctaatg aagatcaact aatgaagtgt aagatagctg ctgctatttg
3501 cttcaggata aagaaaagat taggagtctt cttagccatt tatccttcag
3551 aaaaatccac ttctaatact gactttgtga tggaatataa ttcagagttc
3601 ttcttccact ctcagcatgt ccgtccaaca gttaggtgga tagctgcatg
3651 ctgtaacctt cctgaagtag agactttagt tgcaaggcaa gaagaggctt
3701 ctaacttgat gacttctgtg tcagaaggag ggggctcatt ttccttagca
3751 gcttgtatcc agcaggctca atgtaccctg cattacatgt tgatggggat
3801 gggggtcagt tctttatttg aagaatacaa aaaagcaatc atacggtgga
3851 aggatcctgg cctaggtttc ttcttgctag ataatcctta ctgtgcagga
3901 ttaggaggat tcaggttcaa cctgtataaa gccattgccc agacaccact
3951 aaaatgtctt tattcatact ttatgaagaa ggtcagacac ggtttagaga
4001 ccaatgatgg gacaatacca gagagctgct cagtcagtcc aggtggtgct
4051 attgtgttga gttcagcact taggtggggc tcaaaacaaa agttttacaa
4101 acttagagat aagttgaata tccctgaaga ctggattgat caaattaatc
4151 aaaatccatc tatattatac agagctccca gatctggtga agaagtcatt
4201 cttaggattg ctgaaaaagt gcattcacct ggagttgttt catccttatc
4251 aacaggcaat gcagtggcca aggtcattgc ctcatctgtg tatttcctaa
4301 gtgcagccat attccaggac tctggcagac aagaattctc cattttagat
4351 gactcaaagt acagcttatt gcaaaagctg agtaagctag aaggaattaa
4401 tctaaccaat gcaatcagtg atgaagatct attgttctta tttccaaaca
4451 ttgaagatct gcaatctctt gatagtttgg tgtataatcg aggagctatt
4501 gagattgtaa aaagaaaaca gataaaagaa aacacacagt ctagagttat
4551 cgtctttgag ggaaacagaa atctcagaac ccctgctgag tatttaataa
4601 gtgataaatg gtttgggact cagaaaagca aaattgggag aacagcattt
4651 gaccaagagt gggtcaaggt tacatcaatc atcccctggc taagagaaag
4701 cccacaagaa actcttcaga gctctccact ggacaatcac atccaaataa
4751 gaaatttctt ctctaggatg gatcaaaagc cgagggtagt tagagtaaca
4801 ggtgcaccaa taaagaaaag gtcaggagtc agcaagttgt cgatggtcat
4851 aagagataac ttctcaaaat taggatttat tagagacata gaagatataa
4901 ctggaacaag tagaacaaat tctgcagagt tgctcaaaca cttcatgttt
4951 tgtgctctac agggtccata ttcccaggag agaaaacttc agatggtgat
5001 agacctctta aataaatcaa atcctatagg catcaaagac agtgatggaa
5051 aatcacgatc aaacatttta gctattttac agagttatgt gtatagagaa
5101 ccacatattg cacgacaaat tgaagatgct ggtgctggaa ttatcggagg
5151 gtttgtggtt cctcaaaaac caaaaaagat tgaaaacaca atatattatt
5201 atggttatgg tgtatggaga ggagtgatgg atggaaaaca agtgcaaatc
5251 gaacttgaca atgcagtggg cagccctcct gttataatat ctgtcactat
5301 ggaagagtct gctgaaccct ggcaaatatg caagagtata aggtcatggg
5351 ctgaggatgt gggtgcaaaa aacaatttgg atatttcccc aaagataaaa
5401 aagaggactt gcaaatactg gatgtttgac tttaaaacat tctcttcaga
5451 caaagcatat ggtgctcctg tttacatgac gaagaagaag atggttgatt
5501 ttagactaat tgatgatgca gaaataagta taaaagttag gaaatccacc
5551 gtgaatttgt atgtcagaag tgatggcaga gatgtccaca tactctctta
5601 ctcagcatca gactcagatc tcagccctgc aagcttgagg attaatgatg
5651 agtccaagga tgaaatgatg gaattattca ataaagagcc tagcaagtct
5701 tgggcgtcat gctcaccaat cccggctatc atgatgcaca agatcatcaa
5751 agttgtccaa ggggaactta aaatatcatc gttagacagt ggtagactgg
5801 gagagatcat gaaattgtgc tgtgaatcat ctttgcgatc cagaattggg
5851 actttatttt ctgctcttcc aagtgtgcaa aacacctcta gggttgatgt
5901 cgatgacctg atagatattg ttttgactga ctcaaagaca gctggcttca
5951 gagaaattgt gcagtcacta gaaaatgaca taaaagatga gtacgaggtg
6001 gaagactttg acttatctga tatagactta ttcggaccag cacattataa
6051 agaattgtca gacctgaaca ccataagtca tcccttaatg gatgactatg
6101 tagagttctg tatatcaaca gttggtcgaa aggagctgag acggatattg
6151 gagaccaata gatgtaaaac taaagactta caattgtcta aggatctctt
6201 tttggtatta ggcaggaatc cagatgatat taaagtggat gaatataact
6251 taagagagca aatggcagtg gaagacgaca tgataggata agatcctaca
6301 acatgtcatt aagtgcgaac acaaagt