Sequence of DPV Candiru virus

Chandiru virus segment S, complete sequence.

ACC No: HM119409

Dated: 2011-04-03 | Length: 1842 | CRC: 1823752357

                
ID   HM119409; SV 1; linear; genomic RNA; STD; VRL; 1842 BP.
XX
AC   HM119409;
XX
DT   03-APR-2011 (Rel. 108, Created)
DT   03-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Chandiru virus segment S, complete sequence.
XX
KW   .
XX
OS   Chandiru virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus.
XX
RN   [1]
RP   1-1842
RX   PUBMED; 21289119.
RA   Palacios G., Tesh R., Travassos da Rosa A., Savji N., Sze W., Jain K.,
RA   Serge R., Guzman H., Guevara C., Nunes M.R., Nunes-Neto J.P., Kochel T.,
RA   Hutchison S., Vasconcelos P.F., Lipkin W.I.;
RT   "Characterization of the candiru antigenic complex (bunyaviridae:
RT   phlebovirus), a highly diverse and reassorting group of viruses affecting
RT   humans in tropical america";
RL   J. Virol. 85(8):3811-3820(2011).
XX
RN   [2]
RP   1-1842
RA   Palacios G., Savji N., Sze W., Lipkin W.I.;
RT   ;
RL   Submitted (14-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Center for Infection and Immunity, 722 West 168th Street, New York City, NY
RL   10032, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1842
FT                   /organism="Chandiru virus"
FT                   /segment="S"
FT                   /host="Homo sapiens"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="1967"
FT                   /db_xref="taxon:629725"
FT   CDS             48. .782
FT                   /codon_start=1
FT                   /product="nucleocapsid"
FT                   /protein_id="AEA30071.1"
FT                   /translation="MSYEKLAVDIAGHEIDADTIKAWVQAFAYQGFDAKRVMELLVERG
FT                   GDDWVEDAKQMIILCLTRGNKPSKMMVKMSEKGKKIVQALVKRYSLKEGNPSRDDLTLS
FT                   RVTAALAGYTCQATEYVEEFLPVTGKNMDDLSKNYPRAMMHPSFAGLIDPKLPPDVLST
FT                   ICDAFSLFMVQFSRTINPRNRGLSVSEVASTFDRPINAAMNSSFISGEQRKSFLRNLGI
FT                   LDENMQPSNPVKAAAKVFRGLK"
FT   CDS             complement(972. .1814)
FT                   /codon_start=1
FT                   /product="nonstructural protein"
FT                   /protein_id="AEA30070.1"
FT                   /translation="MSNMLNNVFDIPHITRSATDRSKVYVEYSAYNGYWGTPICRYKGA
FT                   EFPCSSFTVSDKTSFRLRSFIDKGQLPRSWGKPFLQVKGKSPSFFDTTIEKISHLNLER
FT                   QLKWSEPNLKEALSWPLGVPTLAFFKLSLVESYEFNWEEKCFLMTLIMRSGDGAQIDDS
FT                   LVNLYKKLIRELGERDIPCLNFTGQNIEKEIAYVQVLRMLTALPYDYYESDFHSSLYDY
FT                   VKELSEVITPHLLGNRKWTPLHTMSPRYTRIADSWDSDLDSEEDMEIDGPAARWGEGN"
XX
SQ   Sequence 1842 BP; 535 A; 388 C; 371 G; 541 T; 7 other;

hm119409 Length: 1842  03-APR-2011  Type: N  Check: 1563  ..

       1  acacaaagct catcnaggan tgttaactng ngantannta caccaagatg
      51  tcttatgaaa aacttgctgt tgatatcgcc ggccatgaga ttgatgccga
     101  cactatcaaa gcctgggtgc aagcttttgc ttatcaaggc tttgatgcta
     151  agagggttat ggagttgctg gtagagagag gtggagatga ctgggttgaa
     201  gatgctaagc agatgattat tctgtgcctt acaagaggaa acaagccctc
     251  caagatgatg gtgaagatgt cagagaaggg caagaaaatt gttcaagccc
     301  ttgtcaagag atattctctc aaggagggca acccttctag agatgatttg
     351  acactgtcta gagtgactgc tgctttagct ggatacacct gccaggccac
     401  agaatatgtt gaagagtttc tgcctgtcac tgggaagaac atggatgatc
     451  tatccaagaa ctaccccagg gcaatgatgc accccagctt tgcaggactc
     501  attgatccca aacttccccc agatgtgctg tcaacaatct gtgacgcatt
     551  tagcctcttt atggtccagt tctccaggac cataaacccc aggaatagag
     601  gattgtctgt gtcagaagtg gctagcactt ttgacagacc gataaatgca
     651  gccatgaata gctcattcat tagtggtgag cagaggaagt cattcctccg
     701  aaacctcggc attctcgatg agaacatgca gccctctaat cctgtgaagg
     751  ctgctgccaa ggttttccgg ggtctgaaat aatctgcccc attaatttct
     801  ctgatttgca taattgcatg ttaattggtt ataatcccca cccaacaatt
     851  tgactttaat tttccttaat tcacccacct taattaaagc aattaaatca
     901  attaaatata tcaataaaat aaaataaatc aaataaatta atcaaaatta
     951  atcatagtaa attaacccac ctcaattacc ctcaccccac ctggcagctg
    1001  gtccgtctat ttccatgtct tcttcagagt ccagatctga gtcccatgaa
    1051  tcggcaattc tggtatatct ggggctcatg gtgtgtagtg gggtccattt
    1101  cctattccct aacagatgtg gggttatcac ctctgatagc tctttgacat
    1151  agtcatataa tgaggagtgg aaatctgatt cataataatc atagggcaga
    1201  gcagtgagca ttctaagaac ttgaacatat gcaatctctt tttcaatatt
    1251  ttgaccagtg aaatttaaac atggtatatc tctttcacct agttctctga
    1301  ttagtttttt atacagattg acaagagaat catctatttg agccccatca
    1351  ccacttctca taatcagagt catgagaaaa cacttttctt cccagttaaa
    1401  ttcatagctc tctactaaag aaagcttgaa gaatgctaga gtgggaacac
    1451  ccaagggcca actgagtgct tctttaaggt taggttctga ccacttaagc
    1501  tgtctctcca agttaaggtg tgaaatcttc tcaattgtgg tatcaaagaa
    1551  tgagggcgac ttccccttca cctgaagaaa gggttttccc catgatcttg
    1601  ggagctggcc tttatctatg aagcttctta aacggaaaga agtcttgtca
    1651  gaaactgtaa atgaagaaca tggaaattca gctcctttat acctgcagat
    1701  aggagttccc cagtatccat tgtatgctga atactccaca tacactttgg
    1751  atctgtctgt tgcagatcta gttatatgtg gtatgtcaaa gacgttattc
    1801  agcatgttag acatgattta ttttcgtcac tttttcgatc tc