Sequence of DPV Nerine latent virus

Nerine latent virus isolate Ext07 coat protein gene, partial cds.

ACC No: HM119497

Dated: 2010-06-23 | Length: 891 | CRC: 271160594

                
ID   HM119497; SV 1; linear; genomic RNA; STD; VRL; 891 BP.
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AC   HM119497;
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DT   23-JUN-2010 (Rel. 105, Created)
DT   23-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE   Nerine latent virus isolate Ext07 coat protein gene, partial cds.
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KW   .
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OS   Nerine latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus; unclassified Carlavirus.
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RN   [1]
RP   1-891
RA   Pham K.T.K., Lemmers M.E.C., de Kock M.J.D.;
RT   "Molecular characterization of Nerine latent virus (NeLV)";
RL   Unpublished.
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RN   [2]
RP   1-891
RA   Pham K.T.K., Lemmers M.E.C., de Kock M.J.D.;
RT   ;
RL   Submitted (14-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Applied Plant Research; Section Flower Bulbs and Nursery Stocks, Wageningen
RL   UR, Postbus 85, 2160 AB, Lisse, The Netherlands
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FH   Key             Location/Qualifiers
FH
FT   source          1. .891
FT                   /organism="Nerine latent virus"
FT                   /host="Ismene sp."
FT                   /isolate="Ext07"
FT                   /mol_type="genomic RNA"
FT                   /country="Netherlands"
FT                   /note="ICTV decimal code: 14.0.1.0.021"
FT                   /db_xref="taxon:797075"
FT   CDS             1. .>891
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ADI86252.1"
FT                   /translation="MSRMKETASPSGSDEEKENTRKALEERLKKRTEEANKEFTGNNSD
FT                   DELEERFRKLKEYLLKNMRSKQIGNIGLEIGRPALKPMDEIRPDLTNIFTMPTIDILIK
FT                   KGWRPSSTAVSTAQQLIEISAKLQGLGVPPESIAPIVWDTAMYCASAGSSDKMDPQGTV
FT                   EFPGGAITRDSVVATIKEYTTLRAFCRAYAPIVWNYMIGTNQPPANWQAKGFSEQTKFA
FT                   AFDTFDYIRNPAAIKPLEGLIRSPTNEEMIANATHRQLAIDRNSRNDRFSNNSLEVTGG
FT                   LYGCKTKRTLRNLTCD"
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SQ   Sequence 891 BP; 293 A; 177 C; 211 G; 210 T; 0 other;

hm119497 Length: 891  23-JUN-2010  Type: N  Check: 964  ..

       1  atgtcacgga tgaaagaaac agcttctccc tcaggaagtg atgaagagaa
      51  ggagaacacc aggaaagctt tagaagagag attgaaaaaa aggactgaag
     101  aagcaaataa ggagttcact ggtaataatt ctgatgatga gttggaagaa
     151  agatttcgga agctaaaaga gtaccttttg aagaacatgc gttcaaaaca
     201  aattggaaat ataggtttgg aaattggacg tccagcattg aagcctatgg
     251  atgagattag gccggattta acgaatattt tcaccatgcc gacaatcgat
     301  atcctgataa aaaaaggttg gagaccttcc tcgaccgcag tgtcgactgc
     351  acaacagctc atcgaaattt cagctaaatt gcaaggtttg ggggtcccgc
     401  ctgaatcaat agcaccaata gtttgggata cggctatgta ttgtgcaagt
     451  gctggttctt cagacaagat ggatcctcaa ggcactgtcg aattcccagg
     501  cggagctata actcgagact cggtggtcgc cacaatcaag gaatatacta
     551  ctctgcgagc cttttgccgt gcttacgcac ctatagtctg gaactacatg
     601  attgggacaa atcaaccgcc agctaattgg caagctaaag gtttcagtga
     651  acaaacaaaa tttgctgcct ttgatacttt tgattacata aggaacccag
     701  cagcaattaa accactcgaa ggcttaatac gatcacctac gaatgaggag
     751  atgatagcca acgccacgca taggcaactt gcgatcgaca ggaactcgag
     801  aaatgatcgc ttttcgaaca actctcttga agtgactggt gggctgtatg
     851  gttgcaaaac gaagagaact ttaagaaacc tgacctgtga t