Sequence of DPV Rice ragged stunt virus
Rice ragged stunt virus isolate CT segment 2, complete sequence.
ACC No: HM125540
Dated: 2011-05-01 | Length: 3808 | CRC: 1567402748
ID HM125540; SV 1; linear; genomic RNA; STD; VRL; 3808 BP.
XX
AC HM125540;
XX
DT 01-MAY-2011 (Rel. 108, Created)
DT 01-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE Rice ragged stunt virus isolate CT segment 2, complete sequence.
XX
KW .
XX
OS Rice ragged stunt virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Oryzavirus.
XX
RN [1]
RP 1-3808
RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT "Phylogenetic evidence for origin and evolution of rice rigged stunt
RT virus";
RL Unpublished.
XX
RN [2]
RP 1-3808
RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT ;
RL Submitted (15-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agricultural and Forestry University,
RL Fuzhou, Fujian 350002, P.R. China
XX
CC GenBank Accession Numbers HM125539-HM125548 represent sequences
CC from the 10 segments of Rice ragged stunt virus.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3808
FT /organism="Rice ragged stunt virus"
FT /segment="2"
FT /host="rice"
FT /isolate="CT"
FT /mol_type="genomic RNA"
FT /country="China:Changting, Fujian province"
FT /collection_date="2007"
FT /db_xref="taxon:42475"
FT CDS 169. .3747
FT /codon_start=1
FT /product="structural protein"
FT /note="RRSVs2gp1; P2"
FT /protein_id="AEC32882.1"
FT /translation="MTEYTNLPVKWTNGIVISDERMMLDPLPSEVSAVLDAPINYSYRY
FT NELRRTHSLKLFGVWSGYIPSHADKHLMIFQLLQQEKELTGDEIRLALRQMQGSIKLPI
FT NDKLLDSLDRYSLIFAWIAYAGCLDSAFWQQVCADPKCLVYNPDDNLKFSLMFSLARQY
FT SATTRICSADGLRIPSQISPDLGQLAFDLVFNSSVRQTVWFHANDFPAFDFYTKDVGTM
FT VTFHVNFLYNMTHCVPFKTKQSCAEYLIQKAHEAWSVYCGVLNDTIRHRLRLVEGVGIV
FT TLDVDLQILAAVGWYLPLLVYTIRSVSGSDISEWLNVARRGVQDLNCSSMINGEGYVGV
FT PEQFWTIHATSKARMWPRVKKYTCDLTDLYNGDLSSTVLGEGASETGTVKWFDVPLGPK
FT VENFRVVGTRIGALSRANVIYNYEDPSDNCDLARAIGSFVPSLPTSGTRDTNGDLEDAK
FT KMFDYRVSQNVYSICQKGKISSLVSRSVKNLRASLMNGELRVYKGSRLWALRAMLFSDK
FT LRYKSDGQVIDPYESDRGKITVRLNNSSLKMLSAFVTLIELAMAQSSGVEDNMLNGRGL
FT SPLQVRSDREVSRVVIAGAINEPLVGCLRRMYPKLSVIGFGMDAVGENERLTVEGASQR
FT NLACDMLISDIDQTFYSDFTKMCNVTVKHALAFSSWSDYVLMKVNYPSSHLLNEIKQAL
FT LSRGFSRIVLPVVMCGQNSFTSEVFVYIGRAGVGGHVDFKNNWFTKNDILMRRYRHMKA
FT PLITIPQVVHSVVSKSVTKHDTELFANPGSIVALTVEYASAREVVSLISEVCSPVWTWR
FT TGAGANKFVNIVGMLSKARAALTRRTDEHYYLKAFERNIVGTSFGMYKGIPRIDALNCV
FT SWVTIFGAAMRECLYWIVDTLKVQYNEVISIGARNMTDIEFIKPSVKLTCYDEYYANPQ
FT DLATHYNVNYENKYFNWLSPTLVNDSVYVANFVIMAPTEGSESPSATEQLDRIDSVAGA
FT MAKSNITRMTFVGNLYDSRFLADIALSSLPPEGLKVNDTRTTVQIGKYPPCAAVKPSAF
FT LERMKKYKGVLSYHVYPLGYDRVLKTCADNLWIPDVAGSPMLAFCQGLSYAFYITKPAI
FT PDEGIDQFMLDDMPDDGSGSVTPTQSPSPSPSPSAAANTEASTVVEPIDNSNVVSPTVP
FT AQPSQTPVNPNQSTELQSVAKPGIVR"
XX
SQ Sequence 3808 BP; 1047 A; 751 C; 922 G; 1088 T; 0 other;
hm125540 Length: 3808 01-MAY-2011 Type: N Check: 479 ..
1 gataaatctt cccgaagcaa ccacgtttga cgtaacctac tgaagagtcc
51 cccggaagtt tcactcagga gttgagtcct tgaaccccag cattcaatca
101 aaagaacata tcatcatcat cattcaaatc gctttcttcg tacttgttgt
151 ttgttggatt ttcttaaaat gacggagtat acaaatttgc cagttaaatg
201 gacgaacggc atagtcattt cagacgaacg tatgatgctc gatcccttac
251 cgtcagaagt ttcagccgta ctggacgcac caatcaacta ttcctatcgg
301 tacaacgaac tgcggcgcac gcatagtctt aaattattcg gtgtttggtc
351 gggctacata ccaagtcatg ctgataagca tttaatgatc ttccaattat
401 tgcagcaaga aaaggaatta acaggtgacg agataagatt ggcgcttagg
451 cagatgcaag gatcaattaa gttacctata aatgacaagc tgcttgattc
501 gttagaccgg tattctctaa tttttgcgtg gatagcatac gcgggatgtc
551 tagactcagc tttttggcaa caagtatgtg cggacccgaa atgtttggtc
601 tataatccag atgacaatct caaattctca ttaatgttta gtcttgcaag
651 acagtacagc gctacgacta ggatttgctc agcagatgga ttgcgcattc
701 cctctcagat atcgccagat cttggtcaat tggcgttcga tctcgtgttt
751 aatagttccg taaggcagac tgtttggttt cacgccaatg attttcccgc
801 tttcgacttt tatactaagg acgttggaac tatggtcact tttcatgtta
851 atttccttta taacatgacg cattgtgttc cgttcaagac gaagcaatca
901 tgcgctgagt atctgatcca gaaagcacat gaagcgtggt cggtttattg
951 cggagtatta aacgatacga tcagacacag attacgatta gttgagggcg
1001 ttggaattgt tacattagac gttgacttgc aaatattagc tgcggttgga
1051 tggtacttac cattactcgt ctatactatc agaagcgtgt caggttcaga
1101 tatcagtgag tggctcaacg tcgcgagacg aggagttcaa gatcttaact
1151 gtagcagtat gatcaatggt gagggttatg ttggtgttcc ggaacagttt
1201 tggacgatcc acgcaacttc aaaagccagg atgtggccaa gggttaagaa
1251 atacacctgc gacttaacag atttatacaa cggcgatctt tcaagcactg
1301 tattgggcga aggagctagc gagactggaa cagttaaatg gtttgatgtg
1351 cctttaggac ctaaggttga gaatttcaga gtggttggaa cacgtatagg
1401 cgcgttgagc agagctaatg ttatatacaa ttacgaagat ccttccgata
1451 attgtgattt agcgcgagcc attggttcgt ttgttcctag tttgccaact
1501 tctggtacta gagatacgaa tggtgatctt gaagacgcga agaagatgtt
1551 tgactatcgg gtgtcacaaa acgtatatag catttgtcag aaagggaaaa
1601 tttcttcgtt ggtatcgcgc agcgtcaaga acttgagagc gagtctgatg
1651 aatggcgagc tacgcgtcta taaagggagc agactttggg ctctaagagc
1701 gatgttgttc tcagataaac tcaggtacaa aagcgatggt caagtaatcg
1751 atccatacga gagcgacaga ggtaaaataa cagttagatt aaacaactct
1801 agcttaaaga tgctgtcagc ttttgtgacg ctaatcgagc tagcgatggc
1851 acagtcgtca ggcgttgaag ataatatgtt aaatggtcga gggttatccc
1901 ctttgcaagt aagatcagat cgtgaagtaa gtcgagtcgt gatcgctgga
1951 gctattaacg agccattagt tgggtgttta agacgtatgt atccaaagct
2001 gtcagtgatt ggattcggta tggatgcagt tggtgagaat gaacgtttaa
2051 ctgtcgaggg cgcctcacaa aggaatttag cgtgtgatat gctaatatcg
2101 gatattgatc aaacgttcta cagtgatttc actaagatgt gtaatgttac
2151 tgtgaagcat gctcttgctt tctcgagctg gagtgattac gttctgatga
2201 aggtgaacta tccatcctcg catcttttga atgagattaa acaagcccta
2251 ctttcgcggg gattttctag aattgtcctt cctgtagtga tgtgtggtca
2301 aaattcattc acgagtgagg tttttgttta cattggacga gctggtgttg
2351 gtgggcatgt tgattttaag aacaactggt tcaccaaaaa cgatatatta
2401 atgcgtagat atcgtcatat gaaagctcca ttaatcacca taccgcaagt
2451 tgtgcacagc gttgtatcaa aaagtgtgac gaagcacgac accgagctgt
2501 tcgctaatcc tggaagtatc gttgccttga ctgtcgagta tgcatctgca
2551 cgagaggtag tttccctaat tagtgaggta tgttcgcctg tatggacatg
2601 gcgtactgga gctggcgcga acaagtttgt caatattgtc ggaatgcttt
2651 cgaaagctag ggcagctttg accaggcgaa ccgatgaaca ttattatctt
2701 aaggcatttg agcggaatat agtcggtacg agttttggta tgtacaaagg
2751 gatacctcgt atagatgctc ttaattgcgt gtcatgggtg acgattttcg
2801 gagctgcaat gcgtgaatgt ctttattgga tcgttgatac tctcaaagtg
2851 caatataatg aggtgatatc aatcggagct cgtaacatga cggatattga
2901 gttcatcaaa cccagtgtca aattgacatg ctacgacgag tactacgcta
2951 accctcagga tctagcgacg cattataatg tgaattatga aaataagtac
3001 ttcaattggt taagccctac cctcgtcaac gacagtgttt acgtggctaa
3051 tttcgtgatt atggccccta ccgaaggttc cgaatctcct agcgctacgg
3101 agcagcttga tagaatagat tctgttgcag gcgcgatggc aaagtctaat
3151 attactagga tgacgttcgt tggtaaccta tacgattcta ggttcttggc
3201 cgatatagct ctttcgtccc tgccacctga gggattaaaa gttaatgaca
3251 ctagaacaac tgttcaaatt ggtaaatatc ctccatgtgc cgcggttaag
3301 ccttctgcgt ttctagagcg tatgaagaag tacaaagggg tgttatcata
3351 ccatgtgtat cccttgggtt acgatcgtgt tcttaagact tgcgccgata
3401 acttatggat accggatgta gcaggatcgc ccatgctagc tttctgtcaa
3451 ggactatctt acgcgttcta tatcacgaag ccagctatac ctgatgaagg
3501 catagatcaa tttatgttag acgatatgcc cgatgatggt agtggatctg
3551 taactccaac acaatcgcca tctccaagtc cttctcctag tgccgcggct
3601 aacactgagg cttcgactgt cgttgagcct atcgataatt caaatgtagt
3651 gagtccgacg gtaccagcgc aaccatctca gacgcctgtc aatcccaacc
3701 aatcaaccga gctccagagc gttgcgaagc cgggcatcgt taggtaggag
3751 tagttcattc gtgagaacct gcggccaaca ggggaacggg aggagataga
3801 gaaagtgc