Sequence of DPV Rice ragged stunt virus

Rice ragged stunt virus isolate CT segment 6, complete sequence.

ACC No: HM125544

Dated: 2011-05-01 | Length: 2158 | CRC: -413593433

                
ID   HM125544; SV 1; linear; genomic RNA; STD; VRL; 2158 BP.
XX
AC   HM125544;
XX
DT   01-MAY-2011 (Rel. 108, Created)
DT   01-MAY-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Rice ragged stunt virus isolate CT segment 6, complete sequence.
XX
KW   .
XX
OS   Rice ragged stunt virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Oryzavirus.
XX
RN   [1]
RP   1-2158
RA   Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT   "Phylogenetic evidence for origin and evolution of rice rigged stunt
RT   virus";
RL   Unpublished.
XX
RN   [2]
RP   1-2158
RA   Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT   ;
RL   Submitted (15-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Plant Virology, Fujian Agricultural and Forestry University,
RL   Fuzhou, Fujian 350002, P.R. China
XX
CC   GenBank Accession Numbers HM125539-HM125548 represent sequences
CC   from the 10 segments of Rice ragged stunt virus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2158
FT                   /organism="Rice ragged stunt virus"
FT                   /segment="6"
FT                   /host="rice"
FT                   /isolate="CT"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Changting, Fujian province"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:42475"
FT   CDS             41. .2083
FT                   /codon_start=1
FT                   /product="non-structural protein"
FT                   /note="RRSVs6gp1; Pns6"
FT                   /protein_id="AEC32886.1"
FT                   /translation="MQLFIVKLDSRSSASNEILVLDINELRKYVSKHQLSFRGAQVHET
FT                   NSEHSVRNWEDDNITMFFHTSNVFPSEKSVRHALFSRNSVHVCGPLNIGAFRDSLRVLQ
FT                   SPQFPIHTYGDDITVFDKLREFVVVPNSLAVVDMDTSAWERYTYSLFTDEPGTITLADE
FT                   TPPTISPTGRDSVSPVARFSPSISISSIAIGEVGSASKRRQRLVKQAKSSDKTPIPEIR
FT                   LNKKDTAFAETGTEQASPKTEIVAATVHKIPVNHAEADKRVVVLKGRTKDKAQEVREVT
FT                   SLARDTTGVEHELMQSVGDDSVQVSGELSGFGDESFEVSKTDVVGVENKQLAIDRVPEL
FT                   EPCGEVSEDEELVSEGMYAVPLDLDIYAEKCPSPTPPNSPKKREEADHEPIDISSAMMK
FT                   LRLIAAAFQKEMMAYDKIDCLSSDDPAYLLAQFCLRNLNGVFVPEYVEEHSSDEENADD
FT                   PNQGWNGTPVHGSREIFEKLSESRLASMEMISNVKPIRWNSKKTTYAVTIERGNPNLIA
FT                   NAVSDAWANHSQISKRVIRAFGCSTDYCLERLASRDYDAILMLMSSLSGACHATKSYCY
FT                   LQIVAYGSLAAPECEELDSPVASIKCYSAVAHEMHELNRLKESGVAALPDKLMLETYLR
FT                   KLSRHFEDTSAMLETVSTTNAFPFRVVVLLVSMSGIGLVIRPIID"
XX
SQ   Sequence 2158 BP; 588 A; 448 C; 561 G; 561 T; 0 other;

hm125544 Length: 2158  01-MAY-2011  Type: N  Check: 5648  ..

       1  gataaatcct ctgaaaagga gccaaacctc ttgctttgac atgcagctct
      51  tcatagtcaa acttgacagt cgatcgtcgg cttccaacga aattcttgtt
     101  ttagacatca acgaattacg caaatatgtt tcgaaacatc aactcagctt
     151  tcgcggtgct caagtccacg aaaccaattc ggaacattcg gtgcgtaatt
     201  gggaggatga caacattact atgtttttcc acacgtcgaa cgtttttcct
     251  tcagaaaaga gtgttagaca cgccttattt tctagaaact ctgtccatgt
     301  atgcggcccg ctaaatatag gtgcatttcg cgattccttg cgtgtattac
     351  agagtcctca atttccaatc catacttacg gtgacgacat cacggtgttt
     401  gataagttga gggaatttgt agttgtgcct aatagtttag cagttgtaga
     451  catggacact tcagcctggg agcgttacac ctactcgctc ttcacagatg
     501  agcccggaac gataactctg gcagacgaaa cgccacctac tatcagccca
     551  acaggacgag attccgttag cccagtagct agattctcac cttcgatttc
     601  aatctcaagc atcgctattg gtgaagttgg ttcggcaagt aaacgtaggc
     651  aaagattggt taagcaggcc aagtcgtctg acaagactcc tattccggag
     701  attcgtctaa acaagaagga tacagcgttt gctgagactg gtactgagca
     751  agctagtccc aagaccgaaa tcgtggctgc cacagttcat aaaattcctg
     801  tcaatcatgc cgaggcggat aaacgcgtag tggtcttgaa gggtcggaca
     851  aaagataaag cccaagaggt tagagaggta acgagtttag cgagagatac
     901  aactggtgtg gaacatgagt tgatgcaatc agtcggtgat gatagtgtgc
     951  aagtgagcgg tgaattgagc ggcttcggtg acgagtcctt cgaagtgtcg
    1001  aaaacggatg ttgtcggagt agagaacaag caattggcca ttgatcgagt
    1051  accagaactt gagccctgtg gggaggtgag tgaggacgag gagttagtgt
    1101  cagagggaat gtacgctgtg ccattagatt tggatattta tgctgagaaa
    1151  tgtcctagcc cgacgccccc caatagtccg aagaagcgtg aggaggcgga
    1201  tcatgagcca atagatattt cctcagcgat gatgaagcta agattgatcg
    1251  ctgcggcgtt ccagaaggag atgatggctt atgataaaat agattgcctc
    1301  agcagtgatg atccagccta cctacttgct caattctgcc ttagaaattt
    1351  gaatggtgtg ttcgtgcccg agtacgttga ggaacacagt agtgatgagg
    1401  agaatgcgga tgatcctaac caaggctgga atggtacacc ggttcacggt
    1451  agtcgtgaga tctttgagaa attgagcgag tctaggttgg cgtctatgga
    1501  aatgatatca aatgtgaaac cgattcgctg gaacagcaag aagacgactt
    1551  acgctgtcac tattgaacgt ggaaatccaa atttgatcgc taacgcagtc
    1601  tctgacgcgt gggccaatca ttctcaaatt tcgaaaaggg taattcgtgc
    1651  gttcggctgt tcaactgact actgcttaga gcgattagcg tctcgtgatt
    1701  atgatgctat tcttatgtta atgtcaagcc taagtggagc atgccatgct
    1751  acaaagtcgt attgctacct tcaaattgtc gcttatggga gtctcgccgc
    1801  acctgaatgt gaggagcttg attcaccagt tgcatctatc aagtgttaca
    1851  gtgccgtcgc tcatgaaatg cacgagctca accgtctaaa ggaaagcggg
    1901  gtcgctgcat tgccagataa gttgatgctt gaaacctatc tacgtaagtt
    1951  gagccgccac tttgaggata cgtcggctat gcttgagaca gtgtcaacaa
    2001  caaacgcctt tccgttccgt gtggttgtgt tattagtgtc aatgtctggt
    2051  ataggtcttg taatacgacc gattatcgac tagagagaat ggcacgagga
    2101  ctgtgtcttg ggtaaggtaa gggctccgag gtgccactag gaggagatgg
    2151  agaggtgc