Sequence of DPV Blueberry red ringspot virus
Blueberry red ringspot virus isolate Darrow 5, complete genome.
ACC No: HM159264
Dated: 2011-10-06 | Length: 8302 | CRC: -197302106
ID HM159264; SV 1; circular; genomic DNA; STD; VRL; 8302 BP.
XX
AC HM159264; JF421558;
XX
DT 21-JUN-2011 (Rel. 109, Created)
DT 06-OCT-2011 (Rel. 110, Last updated, Version 2)
XX
DE Blueberry red ringspot virus isolate Darrow 5, complete genome.
XX
KW .
XX
OS Blueberry red ringspot virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
XX
RN [1]
RP 1-8302
RX PUBMED; 21796400.
RA Petrzik K., Pribylova J., Plesko I.M., Spak J.;
RT "Complete genome sequences of blueberry red ringspot virus (Caulimoviridae)
RT isolates from the Czech Republic and Slovenia";
RL Arch. Virol. 156(10):1901-1903(2011).
XX
RN [2]
RP 1-8302
RA Petrzik K., Pribylova J.;
RT ;
RL Submitted (27-APR-2010) to the INSDC.
RL Department of Plant Virology, Biology Centre As Cr, V.V.I., Institute of
RL Plant Molecular Biology, Branisovska 31, Ceske Budejovice 370 05, Czech
RL Republic
XX
FH Key Location/Qualifiers
FH
FT source 1. .8302
FT /organism="Blueberry red ringspot virus"
FT /host="Vaccinium corymbosum (blueberry highbush)"
FT /isolate="Darrow 5"
FT /mol_type="genomic DNA"
FT /country="Czech Republic"
FT /collection_date="2009"
FT /db_xref="taxon:172220"
FT CDS 48. .608
FT /codon_start=1
FT /product="B"
FT /db_xref="UniProtKB/TrEMBL:F8QWL2"
FT /protein_id="AEH95570.1"
FT /translation="MEIPDLSQLSNIVLTDNPGTNPGIPYKGKIISIPKNLLPEKTEYS
FT LAYDGSHEQRILPMLRFITAILNNQTEILSFLSINQIKSGTVFTEKYFEEQKNNISIQL
FT EQNRKNIFQKLEELKGLYDKKQDTIIQHSNRIINLITEIEHKKDLDEIKNTLKEIKKDL
FT IDNNNQKEVKELIESLKDISDRI"
FT CDS 608. .1207
FT /codon_start=1
FT /product="C"
FT /db_xref="UniProtKB/TrEMBL:F8QWL3"
FT /protein_id="AEH95571.1"
FT /translation="MTEGNGNGKLTEKIENMILKYEELEKVVKQVSQEIHEIKEQVEVE
FT NDIKDFNESKYYNNTIRGNAKPTKEMIIDNNQKPCYQTDSPFPHLYHTFDPQLNNITDM
FT LMYIIKNCCCKNKHEQKEKQPIIHPKILDEKDRQIKDLEEHIRELEEHRCITILDLKKY
FT FGNKVNEREDKKPIEYIEDQSRPSYRGRKPLWPQII"
FT CDS 1189. .2676
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:F8QWL4"
FT /protein_id="AEH95572.1"
FT /translation="MATNNLMETMKPEMIDQQIEEIRNIMNNLKIEKTEENEIIFGNES
FT ENSDYDVRMDDVKQEPGTSNFEERWKRKRNSNYEYEPYNTDPFINAEDYGYKRGFYKNR
FT EGKWKKPKEPGPVTGRLEDGILNLDCLTNGEELLKQWTAKQSLSTQIDATIRDMDAENY
FT NKYLIYKTSGVVFNYIVDIDIPNISSMKNLEILEEIATKIYQEFLGGMSTQRATAADKH
FT DQERVKYILHKMKICDMCEFEEFYCQFIHYYYMLESSERSAYMNIFIQKLPYPLSKTIN
FT DEFQNQKNANLIPDTLGGIAKVIRAYILLQCTKEQEKMQLINVTKCCPKFEYIPHKFGC
FT SPNSSRRGRRTTKKSKYSKYYKQRKYHTFKPWYKKKRYRMYKRKYQPKYRQRYWKNKSN
FT QKYCPKGKKECKCWICQEDGHYANECPNKDKRRDKVKLLEQLSQVNLEPIENDILSEEE
FT LWYLQTDEESEEESSSNESEQYFYQNNDQSEDDISIY"
FT CDS 2582. .4585
FT /codon_start=1
FT /product="reverse transcriptase"
FT /db_xref="UniProtKB/TrEMBL:F8QWL5"
FT /protein_id="AEH95573.1"
FT /translation="MKSQKKKVVQMNQNNTFIKITISQKTILAYIDTGASLCLLPEYNL
FT PKLLWKELKKPITIRVADKRELQITKVALMITILIEKRKFLVPTIYQFDSGVPMIIGNN
FT FLRLYYPFCQYLSYITLRCPKMINQKQEVIKIPIHHSSQLIKAKLLNLVTNIEEQLLME
FT QVNKILQERFSLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQRDIEEFKEDMEDL
FT INKGLIRPSKSPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIGTPKTLPRSDYIMN
FT RLKGKIWFSTLDVKSAYWQLRLTEESKPLTAFSYPPQKHYEWNVLPMGLKQAPGIFQEF
FT MNRSLHNLEHICLVYVDDIIIFSEKDKNDHLSKVLQVLKRCEDEGIILSQPKAKIAHKE
FT IDFFGLHISEGEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYISEKGFIKNFAKYR
FT KELQKKVSEKVPWKWTSYDTTQVQALKALCQRLPKLYNAKESDLLIIATDASNGHWGAV
FT MTAVTPVYINNYGISIEDLFPKEQHTAQALSSQYQFFGTKDFVQKELLTKYASGTFTDT
FT EKRYPIHELETLAVLQTFRKWKVDLLSKPFILKTDSKYVTGFLRYKIKANYNQGRLIRW
FT QLELSQFSYRTFYIKGSENYGPDTLTREWKEL"
FT CDS 4570. .5853
FT /codon_start=1
FT /product="translational transactivator"
FT /db_xref="UniProtKB/TrEMBL:F8QWL6"
FT /protein_id="AEH95574.1"
FT /translation="MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILSG
FT DSSKLSPSAPEEKKYSVLANIEEVNKQVAAAKSKKEYYVIFNGPMKGIYDEWHKAAPHI
FT QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQTI
FT ESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTIYEL
FT FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHPTFSIQGEED
FT MPSYSVLQIGISNGDMPLMDTHHMPIPKHEELKQINLQNFIGVINHLSNLTANIKMLYK
FT SDTMIIYSKATKEIEPDQEAVFIEFEKNFIENKIPKMPGEMKKELCNHMTKEDHPGHYC
FT QYCPFIQQDDNKSASSEDEGKITMEVEE"
FT CDS 6351. .6812
FT /codon_start=1
FT /product="unknown"
FT /db_xref="UniProtKB/TrEMBL:F8QWL7"
FT /protein_id="AEH95575.1"
FT /translation="MSNQITLLNNYYLQYYIIGIVNERIRLILIDTGAAMSFIKQSFVH
FT QESLTPIQPYTVKGYLDHHTIGDKYLVEHSTNINVILSNTFNKTLLLKTTQTKADVLGA
FT EVLFGMDFLDSFESYSITKEQLILREGTITHYIPRITVDTETIRETLNY"
FT CDS 6814. .7914
FT /codon_start=1
FT /product="movement protein"
FT /db_xref="UniProtKB/TrEMBL:F8QWL8"
FT /protein_id="AEH95576.1"
FT /translation="MSSPIILDQAGIIQNQEQNQISTVNNQNQMSRIEDQNQSEEIRHI
FT NQIFDIIQSNETNDYYGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSITRKNIL
FT YLGKFTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQILVKS
FT TYASIDTPMDIIVIDNRIISKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVTKNLSQ
FT SIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYLDQEIIHIDDLFKNTSTKL
FT VTFEKKNENANDIFRAPPVRMIKPREEDISKPTVTDVTDPLRPTTSSSIQLAPPPNLHR
FT KPESMQNLERQIQELRRTVTNLNEKI"
FT CDS 7911. .8222
FT /codon_start=1
FT /product="A"
FT /db_xref="UniProtKB/TrEMBL:F8QWL9"
FT /protein_id="AEH95577.1"
FT /translation="MSYQYRRGPYLKGSTKRCILEDIEPMKEILSTTKKEILEQFPRSE
FT ERSKIIGNLQGLIDYLVKRQKREAENPELTIQEKILKRLNSIEEKLEKANSFSSIFDD"
XX
SQ Sequence 8302 BP; 3604 A; 1266 C; 1282 G; 2150 T; 0 other;
hm159264 Length: 8302 06-OCT-2011 Type: N Check: 8129 ..
1 tgatatcaga gcttgagcta caaaaagttc aaactcaaaa tatcttaatg
51 gaaattcccg atttatcaca attatcaaat atagtactta ctgataaccc
101 aggaacaaat ccaggaatcc cttataaagg aaaaattata agtataccta
151 agaatctact accagaaaaa actgagtatt cactagctta cgatggatct
201 cacgaacaaa gaatattacc tatgttaaga tttattactg ctatattaaa
251 taatcaaact gaaatattaa gtttcttatc tatcaatcaa ataaagtctg
301 gaacagtatt tacagaaaaa tactttgaag aacaaaagaa taatatatct
351 atacagcttg aacaaaaccg taaaaacata ttccaaaaat tagaagagtt
401 gaaaggatta tacgataaaa aacaagatac tattatacaa cactctaaca
451 ggataataaa tcttataaca gaaatagagc ataaaaagga cttagacgaa
501 ataaaaaata ctctcaaaga aataaagaaa gatttaattg acaacaataa
551 ccaaaaagaa gttaaagagt taattgaaag tttaaaagat ataagtgatc
601 gaatataatg acagaaggaa acggtaatgg aaaattaacc gaaaaaatag
651 aaaatatgat attaaaatat gaagaattag aaaaagtagt aaaacaagta
701 agtcaagaga tacatgaaat aaaagaacaa gtagaagtcg aaaacgacat
751 aaaagacttc aatgaatcaa aatattataa taatacaatt agaggtaacg
801 ctaaacctac taaagaaatg attattgata ataaccagaa accatgttat
851 caaaccgatt caccttttcc acatctatat cacacctttg atccacaatt
901 aaataatata acagatatgc ttatgtatat aataaaaaat tgctgttgta
951 aaaacaagca tgaacaaaaa gaaaaacaac ctataataca tcctaaaata
1001 ttagatgaaa aagatagaca gataaaagat ttggaagaac acataagaga
1051 actagaggaa caccgatgta taaccatttt agatttaaag aaatattttg
1101 gaaataaggt taatgaaaga gaagataaaa agccaataga atatattgaa
1151 gatcaatcaa gacccagtta tagaggaaga aaaccattat ggccacaaat
1201 aatttgatgg aaacaatgaa gccagaaatg atagatcaac aaatcgaaga
1251 gattagaaat attatgaaca atcttaaaat agaaaaaact gaagaaaatg
1301 aaataatatt tggaaatgaa tcagaaaata gtgattatga tgtaagaatg
1351 gatgatgtaa aacaagaacc aggaactagt aatttcgaag aaagatggaa
1401 aagaaaaaga aattcgaact atgaatacga accatataat acagacccat
1451 ttattaatgc agaagattat ggatataaaa gaggattcta taaaaataga
1501 gaaggtaaat ggaaaaaacc taaggaacca ggtccagtaa caggacgatt
1551 agaagatgga atattaaatc tagattgttt aactaatgga gaagagttat
1601 taaaacaatg gacagcaaaa caatcattat caacacaaat agatgctacc
1651 attcgagata tggatgcaga aaactataat aaatatttaa tatataaaac
1701 atcaggagta gtatttaatt acatagtcga tatagacata cctaatataa
1751 gttctatgaa aaatttagaa atattagaag aaatagctac aaaaatctat
1801 caagaattcc taggaggaat gagcacgcaa agagccacag cggcagataa
1851 gcatgatcaa gaaagagtaa aatatatatt acataaaatg aaaatatgtg
1901 acatgtgtga attcgaagaa ttctactgtc agtttataca ttattattat
1951 atgttagaat catcagaacg aagtgcatat atgaatatat ttattcagaa
2001 gttaccatac ccattatcaa aaactataaa tgacgaattt cagaatcaaa
2051 agaatgcaaa cttgatacct gatacattag gaggaatagc taaagtaata
2101 agagcatata tattattaca atgtactaaa gaacaagaaa aaatgcaatt
2151 aatcaatgta acaaaatgtt gcccaaaatt cgaatatata ccacacaaat
2201 ttggttgttc accaaattct tctcgaaggg ggagaaggac aactaaaaaa
2251 tcaaaatatt caaaatacta taaacaacgc aaatatcata cctttaaacc
2301 atggtataaa aagaaaagat atcgtatgta caaaagaaaa tatcaaccca
2351 aatatagaca aagatattgg aaaaataaaa gtaatcagaa atattgccct
2401 aaaggaaaaa aagaatgcaa gtgttggatc tgtcaagaag atggacacta
2451 tgcaaatgaa tgcccaaaca aagataaaag aagagataaa gtaaaattat
2501 tagaacaatt atcacaagtg aatctcgaac ctatagaaaa cgatatatta
2551 tcagaagaag aactatggta tttacaaact gatgaagagt cagaagaaga
2601 aagtagttca aatgaatcag aacaatactt ttatcaaaat aacgatcagt
2651 cagaagacga tattagcata tattgacaca ggtgcatcat tgtgcctatt
2701 accagaatat aatctaccaa aattattatg gaaagaatta aagaaaccta
2751 ttactataag agttgctgat aaaagagaat tacaaatcac gaaagtagca
2801 ctcatgatta ccatactaat agaaaaaagg aaattccttg tacctactat
2851 atatcaattt gattcaggag tacctatgat tataggaaat aactttttaa
2901 gattatatta cccattttgt caatatctat cttacataac attaagatgt
2951 cccaaaatga ttaatcagaa acaagaagta ataaagatac ccatacatca
3001 cagttcacaa ctaataaaag caaagctgct taacttagta acaaatatag
3051 aagaacaatt attaatggaa caagttaata aaatattaca agaaagattc
3101 tcactagact tattaggaga aaagaataaa aataaagaac taatagaaat
3151 aaaattaaaa gacccaaatg ctgaaatatt tgtaccaaat aatataccct
3201 atactcaaag agatatagaa gaattcaaag aagatatgga agatctaata
3251 aataaaggat taattagacc aagtaaaagt ccacatagtg cgccagcgtt
3301 ctatgtagaa aatcattcag aaataaagag agcaaaaaga agaatcgtaa
3351 taaattacaa agctatgaat gaagctacca ttggaacacc taaaacatta
3401 ccaagatcag attatataat gaatagatta aaaggaaaaa tatggttttc
3451 aacattagat gtaaaatcag cctactggca attaagatta acagaagaat
3501 ctaaaccact aacagcgttt agctatccac ctcaaaaaca ttacgaatgg
3551 aatgttttac ctatgggatt aaagcaagct ccaggtattt ttcaagaatt
3601 tatgaataga agtttacata atttagaaca tatatgttta gtatatgttg
3651 atgatattat tatattttca gaaaaggata aaaatgatca tttatcaaaa
3701 gtattacaag ttttgaaaag atgtgaggat gaaggaatca tcttatcaca
3751 accaaaggca aaaatagcac ataaagaaat tgatttcttt ggattacata
3801 tttcagaagg agaaataata ctacaaccac atattttaga aaagctagta
3851 ttatttcctg atgaaattga gaatcgaaag caattacaaa gatttcttgg
3901 aaatttaaat tatataagtg aaaaaggatt tattaaaaat tttgcaaaat
3951 atcgaaaaga attacaaaaa aaagtatcag aaaaagtgcc atggaaatgg
4001 acttcctatg acactactca agtgcaagca ctcaaggcat tatgccaacg
4051 attaccaaaa ttatacaatg caaaagaatc agacttgctg ataatcgcta
4101 ccgatgctag taatggccat tggggagcag ttatgacagc agtcactcca
4151 gtatatatca ataattatgg aatatccatt gaggatttat tcccgaaaga
4201 gcagcataca gcgcaagcat tatcatctca atatcagttc ttcggaacaa
4251 aggactttgt ccaaaaagaa ttacttacta aatatgctag tggaacattc
4301 acggataccg aaaaaagata tcctatccat gaattggaaa cattagcagt
4351 attacaaact tttcgaaaat ggaaagtcga tttattatca aaacccttta
4401 ttttaaaaac agattcaaaa tatgttacag gatttttgag atacaaaata
4451 aaagccaatt ataatcaagg acgattgatt agatggcaac ttgaattatc
4501 acaattcagt tatcgaactt tttatataaa aggatcagaa aattatggcc
4551 ctgacaccct aaccagggaa tggaaggagc tataaaaaca ttggagaatc
4601 aaatcagcac caaagagcaa tcattccaag caaagaagca gaagctagca
4651 gaactcgaag cagagatcaa caatctcaga tcaacattag ccatactcag
4701 tggagatagt agcaaactat caccatcagc cccagaagaa aagaaatatt
4751 cagttctagc caacattgaa gaagttaaca aacaagttgc agcagccaaa
4801 agcaagaagg aatattatgt catttttaat ggacccatga aagggatcta
4851 tgacgaatgg cataaagcag caccacatat tcaaggacaa tccagcatca
4901 ttcacaagaa atatccaaac attgacgaag caaaaaaggc ccttggagga
4951 agctacgcag caatcactaa tgcaccagca tcgcccaaag attcaaaagt
5001 actattggga agatttaaag tcccttcagt accaacaatt gattcaatcc
5051 aaactattga gtcaaaaatg aaagcattaa aggttactca gaagaaatat
5101 aatgattata tggagatcct ctacaactat aaggatcaac ataaattatt
5151 acatttctac cctaagtacc gagatacaat tggatataaa gcaataatct
5201 tgcccgaagc atcagcacta accatttatg aattgttcaa aaatggatta
5251 gctgacacta tctatttttc ggactcaaaa gtattcaatg atttccctga
5301 aagaatcaag caaaccatca acaactattt caagaggttc gccaaggaaa
5351 gaccatgtta catcaaatta ttcagtaccc atccgacatt cagcattcaa
5401 ggagaagaag acatgcccag ttactcagta ctacagatcg gaatcagcaa
5451 tggagatatg cctttaatgg acactcacca tatgccaata cctaagcatg
5501 aggaattaaa gcagatcaat ctacaaaatt tcattggagt aattaatcat
5551 ttatctaatc tgacagcaaa cattaagatg ctgtataaat cagatacaat
5601 gattatctat tccaaagcaa caaaggagat tgaaccagat caagaagcag
5651 tatttattga atttgaaaag aattttattg aaaataaaat tccaaaaatg
5701 ccgggggaga tgaagaaaga attatgcaat catatgacca aggaagatca
5751 tccaggacac tactgtcaat attgtccatt cattcagcag gatgataata
5801 agtcagcatc aagtgaagac gaaggaaaga tcaccatgga agtggaggaa
5851 taaaacgtct tcatccatca ctatcaagat gtagacatca caatgtaaag
5901 ctacggctaa tattagatgg cttagaatct acgccaatgt aaagtagatt
5951 cccttatctt ttattttgta agtttgaagt ccggagttga gttccgtctg
6001 tggaattcct ctatataagg acgccctatc ctatgtttgt agtcagagtg
6051 ttttccatat gtgaataaac gtttatcgtt ttaaaggttt cgccctttca
6101 ctctccagtg ttgagttctt cgcaagaagt tctctgaaga gcacatccta
6151 tccctatata ccctatcctt acctatccgg taattctatc ccaaaaagct
6201 tgttgcagaa acaaacttga aggattcaag acaggattcg tcaaagaaca
6251 ggtatatgcc taaattatca ccatcagaac taatttacgt ttgtgtactt
6301 attaatttca tcatatcaat tttgttatta ctattttgtg ttatcatagc
6351 atgtcaaatc aaattacttt gttgaataat tactatctac aatattatat
6401 tattggaatt gtaaacgaaa gaattagatt gatattaatt gatacaggag
6451 cagctatgtc ctttataaaa caatcattcg ttcatcaaga atcattaaca
6501 cctatccaac catatacagt aaaaggatat ttagatcatc atacaatagg
6551 agataaatat ttagtagaac attctaccaa tataaatgtc atactaagca
6601 acacctttaa caaaacatta ttacttaaga caactcaaac aaaagcagat
6651 gtattaggag cagaagtatt atttggaatg gattttttag atagctttga
6701 atcatattca attacaaaag aacagctaat actaagagaa ggaactatta
6751 cccattatat accaagaatc acggtagaca cagaaactat tagagaaacg
6801 ttgaattact aagatgtcat cacctatcat attagatcaa gcaggaataa
6851 tccaaaatca agaacaaaat caaatatcaa cagtcaataa tcaaaatcag
6901 atgtcaagaa tagaggatca aaatcaatca gaagaaatta gacatatcaa
6951 tcaaatcttt gatattatcc aatcaaatga aacaaatgat tattatggag
7001 ttgatgtcca actagaaaga tctaaactaa aacaaatagc gaaagaagga
7051 aaattaacat taaaatcagg ccaaggaata aaatcagaag gattcttacc
7101 atctattact agaaagaata tattatattt aggaaagttc accagcgagc
7151 aaccattaga aattagtaca gcagtaggac aagaagcctt atcattagta
7201 aatggaaagc agatagcaga cagaatagca aaaatgaaac agtcagataa
7251 agaaaagatt cagtatatac acttgagcac aatacagata ttagttaaat
7301 ctacctatgc ctcaatagat acacccatgg atattatagt tattgataat
7351 agaataattt ctaaaaataa gaaagaacaa gttctaggaa taattaaagg
7401 aaatctgaaa tatggagtta ttaagtttga cgtaagttta cacttcgcca
7451 taccattagt aactaagaat ttaagtcaat ctataggaat attatacaaa
7501 ttccacagac aagatctgat ggaaaaagga gattatccac ttagtatcac
7551 ctactccgta ggatatgcat taagcaatag tcaccatagt gttgattatc
7601 tagatcaaga gattatacat atagatgacc tatttaaaaa caccagtact
7651 aagttagtaa catttgagaa aaagaatgaa aacgctaacg atatatttag
7701 agcaccacca gtaagaatga tcaaacctag agaagaggat atatcaaaac
7751 caacagtaac agatgtcact gacccattac gaccaactac cagtagttct
7801 atccaactag cacctccacc taacctacat agaaaaccag aaagtatgca
7851 gaacctagaa aggcagatac aagagctaag aaggacagtt acaaacctca
7901 atgaaaaaat atgagttatc aatatagaag aggaccatat ctaaaaggaa
7951 gcactaagag atgtatacta gaagatatag aacctatgaa ggaaatatta
8001 agcactacta agaaagaaat tttagaacaa ttccctagat ctgaagaaag
8051 atcaaaaata ataggaaatt tacaaggatt aattgattat ctagttaaaa
8101 gacaaaaacg agaagcagaa aatccggaat taaccattca agaaaagata
8151 ttaaagagat tgaacagcat tgaagaaaaa ttagagaagg ctaattcatt
8201 ttcatcaata ttcgatgatt agaagaaact tctcatcaga caaatcaggt
8251 taatattccg cctgccagtg aaaactagtt agttgaccac cccgatccgt
8301 tt