Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak Uganda virus-[Malawi:Karonga 10D:2009] coat protein gene, partial cds.
ACC No: HM171297
Dated: 2011-03-23 | Length: 1101 | CRC: 1893074928
ID HM171297; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
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AC HM171297;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak Uganda virus-[Malawi:Karonga 10D:2009] coat protein
DE gene, partial cds.
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KW .
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OS Cassava brown streak Uganda virus-[Malawi:Karonga 10D:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1101
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1101
RA Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1101
FT /organism="Cassava brown streak Uganda
FT virus-[Malawi:Karonga 10D:2009]"
FT /host="Manihot esculenta cv. Mkondezi"
FT /isolate="MW:Kar10:09"
FT /mol_type="genomic RNA"
FT /country="Malawi:Karonga Dist., Northern Malawi"
FT /collection_date="2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980521"
FT CDS <1. .>1101
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIK3"
FT /protein_id="ADV16245.1"
FT /translation="ALNQEEIEAEITALKKLWRDNGPTRTRSPFEARRLRAPQVERVNE
FT LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVIDESQNNQQVDPRKPKF
FT KIRGDGSAVRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT YVPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNGTSDERKN
FT EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT DNNVDRERHTTHDVSAHRHSYSGAAIE"
XX
SQ Sequence 1101 BP; 371 A; 175 C; 280 G; 275 T; 0 other;
hm171297 Length: 1101 23-MAR-2011 Type: N Check: 1624 ..
1 gccttaaatc aggaggaaat agaagcagag atcactgctt taaagaagct
51 gtggagagat aatgggccaa caaggacgcg tagtccattt gaggctagga
101 gattgagagc cccacaagtt gagcgtgtga atgagttact tcagaaactg
151 aaagatgaag gattgcaaac aaagaagagg ccatgtggag aaccagatga
201 tggggaagtg gtggatgatg atagtgatga tggtaataat cagagatctg
251 gaaaggaagt tattgatgaa agccagaata atcagcaagt tgatccaaga
301 aagccaaaat tcaaaattag aggagatgga agtgctgtta gacgggatga
351 cattgataaa attccaacta atgctcttga gatcaagaag acatttaagc
401 ctccaaaggt ttcacaatca gcttacattt ggattccacg ctcccagagg
451 gataatctga ctcctgatgt aattcagaat ttcttggcat atgtacctcc
501 atctcacgca atagataatc aacttgcttc aggaattgaa gttgagaact
551 gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat
601 cgcacaattt tgccagcttg gattgtgaac tgtatagtga acggtactag
651 cgatgaaagg aagaatgaga agtcatggcg agcagttgaa ttgaattctc
701 agggggaaga tgttgatgat tttgagtatc caatggagcc aatgtacaaa
751 tttgcattgc caactatgag gaaggttatg agaaacttct ctagccaagc
801 tatcctcatg tatcagaata gtgttgctgc aggtaaggcg tttgtgataa
851 aagctgctag aaatgctgga tacacaagca ttgaaaataa atggctaggt
901 atagattttc ttgccgaggc tcaattgtct cagagtcaac ttgatatcaa
951 gcatcagatt ctggcagcga atgttggtag gacaaagaca agactgtttg
1001 cattagcagc tcctggagat gataataatg tagatagaga aaggcacacg
1051 acacacgatg tcagtgcaca caggcacagt tacagtggtg ccgcaattga
1101 a