Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak Uganda virus-[Malawi:Nkhotakota 42:2009] coat protein gene, partial cds.
ACC No: HM171305
Dated: 2011-03-23 | Length: 1101 | CRC: -88443334
ID HM171305; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
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AC HM171305;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak Uganda virus-[Malawi:Nkhotakota 42:2009] coat protein
DE gene, partial cds.
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KW .
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OS Cassava brown streak Uganda virus-[Malawi:Nkhotakota 42:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1101
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1101
RA Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1101
FT /organism="Cassava brown streak Uganda
FT virus-[Malawi:Nkhotakota 42:2009]"
FT /host="Manihot esculenta cv. Gomani"
FT /isolate="MW:Nkt42:09"
FT /mol_type="genomic RNA"
FT /country="Malawi:Nkhotakota Dist., Central Malawi"
FT /collection_date="2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980529"
FT CDS <1. .>1101
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIL1"
FT /protein_id="ADV16253.1"
FT /translation="ALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT LLQQLKDEGLQTKKRPCGEPDDGEVVDDESDDGNNQRSGKEVVDEDQNNQHMEPKKSKF
FT KTRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT YIPPSHAIDNQLASGVEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT VIKAARNAGYTSVENKWLGIDFLAEVQLSQSQLDIKHQILAANVSRTKTRLFALAAPGD
FT DNNVDKERHTTHDVSATRHSYSGAAIE"
XX
SQ Sequence 1101 BP; 380 A; 183 C; 273 G; 265 T; 0 other;
hm171305 Length: 1101 23-MAR-2011 Type: N Check: 7906 ..
1 gccttaaatc aggaggaaat agaagcagaa ataactgcct tgaagaagtt
51 gtggaaagat aatggaccaa caagaacacg tagtccgttt gaagctagga
101 ggctgagagc tccgcaagtt gagcgtgtca atgaattact ccaacaactg
151 aaagatgaag gattgcaaac aaagaagagg ccatgtgggg aaccagatga
201 tggggaagtg gtagatgatg aaagtgatga tggtaacaac caaagatctg
251 gaaaggaagt tgttgacgaa gatcagaaca atcagcacat ggaaccgaag
301 aaatcaaaat tcaagaccag aggagatgga agtgctatta gacgggacga
351 cattgataaa atcccaacta atgctcttga gattaagaag acattcaagc
401 ctccaaaagt gtcacagtcg gcttatattt ggattccgcg ctctcaaagg
451 gataatctaa cccctgatgt tattcagaac ttcctggcgt atatacctcc
501 atctcatgcc atagataacc aacttgcttc aggagttgaa gttgaaaatt
551 gggcaatcga ggttgctaag gcatatggag ttaatataca agagttctat
601 cgcacagtct tgccagcttg gatagtgaat tgtatagtga atgggactag
651 cgatgaaagg aaaaatgaaa agtcatggcg agcagtcgaa ctgaattctc
701 aaggggaaga tgttgatgat tttgagtatc caatggagcc aatgtacaaa
751 tttgcattgc caactatgag gaaggttatg agaaacttct ctagccaggc
801 tatcctcatg tatcagaata gtgttgctgc aggtaaggcg tttgtaataa
851 aagctgctag gaatgctgga tatacaagtg ttgagaataa atggctaggt
901 atagattttc ttgccgaagt tcaattatct caaagtcaac ttgatatcaa
951 gcatcagatt ctggcagcaa atgttagtag aacaaagaca aggctgtttg
1001 cattagcagc tcctggagat gataataatg tagataaaga aaggcacacg
1051 acacatgatg tcagtgcaac taggcacagt tacagtggtg ccgcaattga
1101 a