Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus isolate SDJNiR18 segment S10, complete sequence.

ACC No: HM188532

Dated: 2013-01-31 | Length: 1801 | CRC: -2020894362

                
ID   HM188532; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188532;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   31-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate SDJNiR18 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   Fijivirus group 2.
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RN   [1]
RP   1-1801
RA   Zhu Q.;
RT   "Phylogenetic analysis of rice black-streaked dwarf virus (RBSDV) in
RT   China";
RL   Unpublished.
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (04-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="rice"
FT                   /isolate="SDJNiR18"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1. .21
FT   CDS             22. .1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="ADI33247.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 572 A; 332 C; 328 G; 569 T; 0 other;

hm188532 Length: 1801  31-JAN-2013  Type: N  Check: 357  ..

       1  aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc
      51  cgatcttatc cataatggtg taccccagag actttccgat acaataattt
     101  tgaacaaccg accaacaatc actctgctat ctcatttcaa caatctattt
     151  catgaattaa acattgtcaa atcgccccac gttgcatctt ctcaaactac
     201  cgttaatttg tacattcgta agcatttgtt gacccgactt catgatagac
     251  tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagac
     301  catattcgta gcttctttca aaatgaacat caacctattt ttcagaccct
     351  aacgaacaac gacctaagtg aagaatttgt aggtgtgact acttttggac
     401  taagcttatt tgctacctcc aaacttgatg ctgaacaaat agaacgtgta
     451  caaattgaga ccctaactga aggaaacatt actttgaagc ccttttccgc
     501  tgatggttta gaagtcattc tcgatgatag ttatattggt atagttggta
     551  aaattccagg tttagaagtt cataaattgt tagataaatg ttgtcgtgaa
     601  gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg
     651  tactggtaaa ttaagaattg atggtggtta cgattttaat tgtcctgcaa
     701  gcactacgga tgttacacat tacggtggtt atgaccaatt ttcacgtcaa
     751  atgttcgaac gtttgaatct attttataat attagcctta gcataatccc
     801  cgtttcagct ttgaagacag ttcatttatt tgaaaaagaa ctaagtgttt
     851  tggatgcaga taaatcttta ctcgaacaaa cttggagcgc agtagcgtca
     901  tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga
     951  tgaatatgaa ttgaccagct tgtctacgtt gcgcactaat tacgatggca
    1001  cctctgcttc tagtcctttc acagataaga aattcattga ctggtatatt
    1051  aagactttct ctaaaactga gaaaggatcg tcgttgcgtc gaaacgaatt
    1101  agaagagaaa agtgccacta gtacttcaac tacagtaaag aaggttaaaa
    1151  ttcatttctc cgttcaatat tttgatgaat ttaaggttaa tggacatgaa
    1201  aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta
    1251  tcgtaaaatt ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctc
    1301  tagctgtacc ttgttttgat tacattaagc ttggcgttga gaaagcattt
    1351  catttagcac ccgtaattct gaagaagtat aacttgacta ttgatgatat
    1401  tatcaacttc attgataaag gaccttctta tttagctaaa ttagacaaga
    1451  ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct
    1501  aatatcattc aagctgttta caaaaccgat cccagtaata atgttatgaa
    1551  ctcagtaatt atcagtagag cgaacaattt gttgaaatct gatagggaca
    1601  ggctattaaa gaaggcactt tccgccaacg tttcttcttc caacacatct
    1651  agtcatgaac atgtacagaa gatagtatta aataaagtga caagatgacc
    1701  actgggagta tatccttagt gcgactagtt cagtgctgtg cgatcttcag
    1751  ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt
    1801  c