Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus isolate JSXHR44 segment S10, complete sequence.

ACC No: HM209075

Dated: 2013-01-31 | Length: 1801 | CRC: 92628230

                
ID   HM209075; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM209075;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   31-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate JSXHR44 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   Fijivirus group 2.
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RN   [1]
RP   1-1801
RA   Zhu Q.;
RT   "Phylogenetic analysis of rice black-streaked dwarf virus (RBSDV) in
RT   China";
RL   Unpublished.
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RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (08-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="rice"
FT                   /isolate="JSXHR44"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1. .21
FT   CDS             22. .1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="ADI33267.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSILDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKTLSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 578 A; 328 C; 321 G; 574 T; 0 other;

hm209075 Length: 1801  31-JAN-2013  Type: N  Check: 5198  ..

       1  aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc
      51  cgatcttatc cataatggtg taccccagag actttccgat acaataattt
     101  tgaacaaccg accaacaatc actctgctat ctcatttcaa caatctattt
     151  catgaactaa acattgtcaa atcgccccac gttgcatctt cccaaactac
     201  tgttaatttg tacattcgta agcatttgtt gacccgactt catgatagac
     251  tacaaaccgt agaaactagc actttgccca acattacaca acttaaagac
     301  catattcgta gcttttttca aaatgaacac caacctattt ttcagaccct
     351  aacgaacaac gacctaagtg aagaatttgt aggtgtgact acttttggac
     401  taagcttatt tgctacctcc aaacttgatg ctgaacaaat agaacgtgta
     451  caaattgaga ccctaactga aggaaacatt actttgaaac ccttttctgc
     501  tgatggttta gaagtcattc tcgatgatag ttatattggt atagttggta
     551  aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa
     601  gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg
     651  tactggtaaa ttaagaattg atggtggtta cgattttaat tgtcctgcaa
     701  gcactactga tgttacacat tatggtggtt atgaccaatt ttcacgtcaa
     751  atgttcgaac gtttgaatct attttataac attagcctta gtataattcc
     801  cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa ctaagtattt
     851  tagatgcaga taaatcttta ctcgaacaaa cttggagcgc ggtagcgtca
     901  tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga
     951  tgaatatgaa ttgaccagtt tgtccacttt gcgcactaat tacgatggca
    1001  cctctgcttc tagtcctttt acagataaga aattcattga ttggtacatt
    1051  aagacttttt ctaagactga gaaaggatcg tcgttgcgtc gaaacgaatt
    1101  agaagagaaa agtgccacta gtacttcaac tacagtaaag aaggttaaaa
    1151  ttcatttctc cgttcaatat tttgatgaat ttaaagttaa tggacatgaa
    1201  aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta
    1251  tcgtaaaatt ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt
    1301  tggctgtacc ttgttttgat tacattaagc ttggcgttga gaaagcattt
    1351  catttagcac ccgtaattct gaagaagtat aatttaacta ttgatgacat
    1401  tatcaacttt attgataaag gaccttctta tttagctaaa ttagacaaga
    1451  ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct
    1501  aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa
    1551  ctcagtaatc atcagtagag cgaacaattt gttgaaatct gatagggaca
    1601  ggctattaaa gaagacactt tccgccaacg tttcttcttc caacacatct
    1651  agtcatgaac atgtacagaa gatagtatta aacaaagtga caagatgacc
    1701  actgggagta catccttagt gcgactagtt cagtgctgtg cgatcttcag
    1751  ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt
    1801  c