Sequence of DPV Potato virus Y

Potato virus Y isolate HOR.MI.NTN.T polyprotein gene, partial cds; and 3' UTR.

ACC No: HM243479

Dated: 2011-06-21 | Length: 1133 | CRC: 1398149815

                
ID   HM243479; SV 1; linear; genomic RNA; STD; VRL; 1133 BP.
XX
AC   HM243479;
XX
DT   29-DEC-2010 (Rel. 107, Created)
DT   21-JUN-2011 (Rel. 109, Last updated, Version 3)
XX
DE   Potato virus Y isolate HOR.MI.NTN.T polyprotein gene, partial cds; and 3'
DE   UTR.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1133
RX   DOI; 10.1007/s11262-010-0546-8.
RX   PUBMED; 21082231.
RA   Hosseini A., Massumi H., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   "Characterisation of potato virus Y isolates from Iran";
RL   Virus Genes 42(1):128-140(2011).
XX
RN   [2]
RP   1-1133
RA   Massumi H., Hosseini A., Heydarnejad J., Hosseini Pour A.;
RT   ;
RL   Submitted (19-MAY-2010) to the INSDC.
RL   Department of Plant Protection, Shahid Bahonar University of Kerman,
RL   Kerman, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1133
FT                   /organism="Potato virus Y"
FT                   /host="tomato"
FT                   /isolate="HOR.MI.NTN.T"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /note="isolated between Jan-2005 and Jul-2007"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .804
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E7CN43"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CN43"
FT                   /protein_id="ADU17166.1"
FT                   /translation="GNDTIDAGGSTKKDAKQEQGIIQPNLNKEKEKDVNVGTSGTHTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPSINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAETYIQMLHKKELYLPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 1133 BP; 350 A; 215 C; 264 G; 304 T; 0 other;

hm243479 Length: 1133  21-JUN-2011  Type: N  Check: 8037  ..

       1  ggaaatgaca caatcgatgc aggaggaagc actaagaagg atgcaaaaca
      51  agagcaaggt atcattcaac caaatctcaa caaggaaaag gaaaaggacg
     101  tgaatgttgg aacatctgga actcatactg tgccacgaat taaagctatc
     151  acgtccaaaa tgagaatgcc caagagtaaa ggtgcaactg tactaaattt
     201  ggaacactta ctcgagtatg ctccacagca aattgacatc tcaaatactc
     251  gagcaactca atcacagttt gatacgtggt atgaagcggt acaacttgca
     301  tacgacatag gagaaactga aatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gaaaatggaa cctcgccaag catcaacgga gtttgggtta
     401  tgatggatgg agatgaacaa gtcgaatacc cactgaaacc aatcgttgag
     451  aatgcaaaac caactcttag gcaaatcatg gcacatttct cagatgttgc
     501  agaaacgtat attcaaatgc tccacaaaaa ggaactatat ctgccacgat
     551  atggtttagt tcgtaatctg cgcgatggaa gtttggctcg ctatgctttt
     601  gacttttatg aggtcacatc acgaacacca gtgagggcta gggaagcgca
     651  cattcaaatg aaggccgcag cattgaaatc agcccaacct cgacttttcg
     701  ggttggacgg tggcatcagt acccaagagg agaacacaga gaggcacacc
     751  accgaggatg tctctccaag tatgcatact ctacttggag tcaagaacat
     801  gtgatgtagt gtctctccgg acgatatata agtatttaca tatccagtaa
     851  gtattttggc ttttcctgta ctacttttat cataattaat aatcagtttg
     901  aatattacta atagatagag gtggcagggt gatttcgtca ttgtggtgac
     951  tctatctttt aattccgcat tattaagtct tagataaaag tgccgggttg
    1001  tcgttgttgt ggatgattca tcgattaggt gatgttgcga ttctgtcgta
    1051  gcagtgacta tgtctggatc tatctgcttg ggtggtgttg tgatttcgtc
    1101  ataacagtga ctgtaaactt tcaatcgggg gcc