Sequence of DPV Bean leafroll virus
Bean leafroll virus strain WA RdRp P1-P2 fusion protein-like gene, complete sequence; and RNA-dependent RNA polymerase 1, CP/systemic movement/aphid transmission fusion protein, coat protein, and movement protein genes, complete cds.
ACC No: HM439776
Dated: 2010-10-28 | Length: 5884 | CRC: -1045761888
ID HM439776; SV 1; linear; genomic RNA; STD; VRL; 5884 BP.
XX
AC HM439776;
XX
DT 28-OCT-2010 (Rel. 106, Created)
DT 28-OCT-2010 (Rel. 106, Last updated, Version 1)
XX
DE Bean leafroll virus strain WA RdRp P1-P2 fusion protein-like gene, complete
DE sequence; and RNA-dependent RNA polymerase 1, CP/systemic movement/aphid
DE transmission fusion protein, coat protein, and movement protein genes,
DE complete cds.
XX
KW .
XX
OS Bean leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5884
RX PUBMED; 20697921.
RA Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT "Molecular characterization of pea enation mosaic virus and bean leafroll
RT virus from the Pacific Northwest, USA";
RL Arch. Virol. 155(10):1713-1715(2010).
XX
RN [2]
RP 1-5884
RA Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT ;
RL Submitted (02-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology, Washington State University, 345 Johnson
RL Hall, Pullman, WA 99164-6430, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5884
FT /organism="Bean leafroll virus"
FT /host="pea"
FT /strain="WA"
FT /mol_type="genomic RNA"
FT /country="USA:Washington State"
FT /collection_date="Jul-1994"
FT /db_xref="taxon:12041"
FT misc_feature 113. .2817
FT /note="similar to RdRp P1-P2 fusion protein"
FT CDS 113. .1219
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase 1"
FT /note="ORF1"
FT /protein_id="ADO86943.1"
FT /translation="MFNFDSLITASSRVVKDFILFCYNRARSVYCALKRWLWELQGKFD
FT AHNAFVDLCYDAMYGIEKFEEELAEEYTLAESEVALAECHYRYLVSNGAPLTHWPVPCP
FT PPGAHRSIDDYEDSVDEAGAFEEVIPSVPKPEPIPSKDGKRDHSKSNPFRVKAFINLVK
FT AKEVLQATEQKIKVVYEEEIGESPFGRWFNTLPSRMHYIKRALKKRAVNAKRAKHVTSM
FT MKEVNVIPDFVACCEVVQVPTGEMIPPKKNEHGEDVGEPTPKTKMVRRVLPECAAEARS
FT YIRQHIRNNNMRLIDGTDVAHATINRYALKFCEELDLDLPSTTMLVDYAMTMVPLPLKN
FT DIERAKIVHSPNARRIRDELDCLTSSVF"
FT CDS 3027. .5195
FT /codon_start=1
FT /transl_except=(pos:3615. .3617,aa:OTHER)
FT /product="CP/systemic movement/aphid transmission fusion
FT protein"
FT /note="ORFs 3 and 5"
FT /protein_id="ADO86946.1"
FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKP
FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV
FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT
FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPKXVDGEPDPPGPGPDPPPPTPAPAPQP
FT QPTPKHERFIVYTGVPESRISAQSTDDSISVYSLQNQRLRYIEDENANWTNIEARWYSN
FT NNVKATPMFIFPVPQGKWSVEISTEGYQPTSSTTDPNNGKCDGLIAYSDDDKTDVWNVG
FT VQKNITLSNNKADNTWKYGHPDLEINNCKFNNRQVLERDAYISFHVETTGPNASFFLVA
FT PPVQKTARYNYAVSYGAWTDRMLEFGSVTVALDEHLEGGYSSHYIRRSPRPGHLESTRT
FT YDLHLLPHMDDLIAANTTAVVDGYGSSISIDRQVLVAVDNHIVDSGDEMDDLPGYSSSS
FT SEAPKLPAVNQTKLPPKGFLSRLRESEIEEIADKPTEITTPEVRQLADATRQPFAAGMY
FT NDAFERLSINEKKRNFDSVKDDIAEIERTLPKEEYRVPKLPRIKPASEVDDDHYGESQQ
FT TLAEIERRNVWASKDDAVAVESPPPGYPLGPIEARELAPFEWSRPDYEPPKPKKSLFGR
FT LKSQAKEEANPSSPRNDIRRSSFSSFRR"
FT CDS 3027. .3617
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /protein_id="ADO86944.1"
FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKP
FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV
FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT
FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPK"
FT CDS 3172. .3600
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="ADO86945.1"
FT /translation="MDLPEDQARFTNSYSLRTTSMETPREVSRSGRLYQSASRSQMAYS
FT RPTMSIISRTSSWRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTSSASPSLRRKSSLG
FT RLSMDRHGTTLQRTNSGFSTKETEMPRLLDRSESLSRY"
XX
SQ Sequence 5884 BP; 1723 A; 1288 C; 1380 G; 1493 T; 0 other;
hm439776 Length: 5884 28-OCT-2010 Type: N Check: 591 ..
1 aaagttgaca cctttacaag agcaggtttt acaagttgac tacttgtgta
51 ttggaaacct cactgcccaa cgcctccgta tcgcgattgc agtttacatt
101 agtgtctttt aaatgtttaa ttttgatagc ttgatcaccg cgtcttcgcg
151 ggtggtcaaa gattttattc ttttttgtta taatagggca aggtcagtat
201 attgtgccct taaacgctgg ctgtgggagc tgcagggaaa atttgacgca
251 cataatgcgt ttgttgatct ctgctacgat gccatgtatg gcattgaaaa
301 attcgaggag gagctggccg aggaatacac cttggctgaa tctgaagtcg
351 ccctagctga gtgccattat aggtacttgg ttagcaatgg tgctcccctc
401 acccactggc cggtgccttg cccgcctcct ggtgctcatc gttccataga
451 tgactatgaa gattctgtgg acgaggctgg ggcatttgag gaagtgattc
501 cctctgtgcc aaaacctgaa cctatccctt ctaaggatgg gaagagggac
551 cactctaaaa gtaatccttt tagagttaaa gctttcatta acctcgtgaa
601 agcaaaagag gttttacagg ccactgaaca aaaaattaag gtggtctacg
651 aggaagagat tggagagagc ccctttggaa ggtggtttaa tactctcccg
701 tcccgcatgc attacatcaa gcgtgcgctg aagaaacgtg ctgttaacgc
751 aaagagagca aagcacgtaa caagcatgat gaaggaagtc aacgtgattc
801 ctgacttcgt cgcatgctgt gaagtcgtcc aggtacctac tggcgaaatg
851 atacccccaa agaaaaatga acatggggaa gatgttggcg aacccacccc
901 caaaacaaaa atggtgagga gggtactccc cgaatgtgca gctgaagcac
951 gttcgtacat aaggcagcat atccgcaaca acaacatgcg ccttattgac
1001 ggcactgacg tggcccacgc aaccattaat aggtatgcgt tgaagttctg
1051 cgaggaactt gatcttgatc tgccaagcac aactatgctg gttgattatg
1101 ctatgactat ggtccccctt cccctcaaaa acgacattga gagggcgaag
1151 atagttcact cacctaatgc tagacgcatt agagatgagt tggactgtct
1201 cacctcatcg gttttttaga ggggctctgc tccgactctg gttttgaatc
1251 ccccttttct attttgggat taccagagat cgtggtgcgt agtggggcta
1301 tccctaggaa gagtcgtagt aggattagtt ttcttagtca gttcacccta
1351 ggcctagatt accagtgtcc caatcccagt ttgcacaatg cactggtcgc
1401 agttgaacgt cgagtgttca ctgtaggaaa aggaaatgag gttgtgcgcc
1451 cttactctcc ccttcggggt cagtttgaaa agatgaacta ctttagagat
1501 gctattgtta aagatgttgg atgtcctaag acatacacac cagaacaact
1551 tgctgccacc ttcaaatcag ggaagaggtc gttgtataat acagcggttt
1601 tatccttgaa aaggaaggct gttgagaagc aagattcatt cgtaactgca
1651 tttctaaaga tggaaaaaca tatgatgagt aagaagatcg cacccagact
1701 tatctgcccc cgcaataaac ggtacaatgt tgaattaggg cggcggctaa
1751 aattttctga gaagaaattt atgcacgcaa tagataatgt cttcaaatcc
1801 cccactgttc ttagcggtta tggcagtttt aaagtgggaa ggataatagc
1851 cggcaaatgg ggcaagttta agcaccccgt agccattggt gttgatgcca
1901 gtcgctttga ccaacatgtc agcaagcagg ccctagaatg ggaacactct
1951 atttataatg ggtgttttcg agacaaacaa ctagaggaac tcttgaaatg
2001 gcaaacagaa aacaaagtta tgctgtttgt tgaagataag atattgaagt
2051 tcaaagtgtc tggacacaga atgtcaggag acatcaacac atcaatgggc
2101 aacaaattga tcatgtgcgg gatgatgcac aattacttca gagagctagg
2151 tgtagaagct gagctatgca ataatggaga tgattgggtc attatctgtg
2201 agcgaaaaaa cgagaaaaga ttctcagaca tgcacagatg gtttaaggaa
2251 tatggctttg atatgcagat agaaaaaccc gtttacaaac taacggagtt
2301 agaattttgc caatccaaac cgatcaagat caacggcttt tacagaatgg
2351 tgcgtaaacc acagtctatt tcaaaggacg cacattctct catttccatg
2401 gcatcagctg aagatgtcaa aaccttcatg agtgctactg ctcaatgcgg
2451 gttaatttta aatagtgggg tacccgtgtt ggaagcattt cataattgcc
2501 tatacaaagc ttccgggtac aaacatgttt cgcaggaact aatcgataag
2551 gtagtctcct ttggtacgca agacaaactc gggctcagga aagagcgagt
2601 tgaagaacca gtaactatgg aaaataggtt gagttactgg gagtcttttg
2651 gggttgaccc gcaaactcag gtccttgttg aacgatactt caacaatttg
2701 caggttagca tcgagccccg tggcgtaaag agattgacgc ctttactcga
2751 cgcgaaactt ttaaacatag acatccctgc tagatgctct gtgtccttac
2801 ccactattct gcagtagatt atattatatt attagtagct attattatat
2851 tagtagttct taatctcttg cctagctatt gcctgaggag agaagaatag
2901 gttccttcga ttacaagttc ttagctgcgt ttgtgttggg cttcgtatcc
2951 aacattccag ttacagtatt gggaatctat attgtttacc aacggattct
3001 aaaagaaatc agagagataa tcaacgatgg tcgctagagg aaaacgagtt
3051 gtcgttcgac aattacagac ccgcgcaagg agacgtttac cagtcgttct
3101 ggcaacggcc cctgtgcgac cacaacgaaa acgacgacaa cgaggacgaa
3151 ataacaaacc tcgaggagga aatggatttg cccgaagatc aagccaggtt
3201 cacgaattcg tattctctaa ggacaacctc aatggaaact ccaagggaag
3251 tatcacgttc gggccgtctc tatcagagtg caagccgctc gcagatggca
3301 tactcaaggc ctaccatgag tataatatca cgaacgtcga gctggcgtac
3351 atcaccgagg cctcttccac ctcctcaggt tccatcgctt atgaactcga
3401 tcctcacctc aagaacacaa caatccagtc caaaattaac aagttcagca
3451 tcaccaagtc tgagaagaaa aagttctctc ggaaggctat caatggacag
3501 gcatggcacg acacttcaga ggaccaattc aggattctct acgaaggaaa
3551 cggagatgcc aagattgctg gatcgttcag agtcactatc aaggtattga
3601 cacagaatcc taaataggta gacggagaac cggatcctcc gggccctggc
3651 ccagatccac caccaccaac acctgcacca gcaccacaac cacagccaac
3701 gccgaagcac gagagattca tcgtttatac tggcgtaccc gagtcccgta
3751 ttagtgcgca atcaacggat gattcaatct ccgtttattc tttgcaaaat
3801 caaagattgc gatatatcga ggacgaaaat gcgaactgga cgaatattga
3851 agccaggtgg tattctaaca acaatgttaa agccaccccg atgtttattt
3901 tcccagttcc tcaaggcaag tggtcggttg agatatctac tgaagggtac
3951 caaccaacgt caagcacaac agatcctaat aatgggaaat gcgacggatt
4001 gatcgcttac agtgatgacg ataagacgga tgtttggaat gtaggagtgc
4051 aaaagaacat aacccttagc aacaacaagg ccgacaacac gtggaagtat
4101 ggccacccag acttggagat taacaactgc aagttcaaca ataggcaagt
4151 cctggaacgc gatgcgtaca tttcgttcca tgttgaaaca actgggccca
4201 atgcttcctt cttcttagtt gcgcctccag ttcaaaagac tgcccggtac
4251 aattatgccg tatcttatgg agcttggact gataggatgc tagagtttgg
4301 ttctgttact gttgcacttg atgaacattt agaaggtggt tacagttctc
4351 attacattag gaggtcacca aggccaggac accttgagtc gacaaggaca
4401 tatgatttgc acttattgcc tcatatggac gatctcatag ccgccaacac
4451 tacagctgtt gtagatggct atgggagtag tattagtata gatagacaag
4501 tcttagttgc cgttgacaat catatagtag attccggtga cgagatggat
4551 gatcttccag gttattcaag ctcatcttct gaagcaccca aattacctgc
4601 cgttaatcaa acgaaattgc caccaaaagg ttttctttcc aggttgagag
4651 aatccgagat cgaagagata gcggacaaac caaccgagat aacaacacct
4701 gaggttagac aattagctga tgctacgcgc cagccttttg ccgcaggaat
4751 gtacaatgac gcttttgagc gactgtccat aaatgaaaag aaacgcaatt
4801 ttgattccgt caaggatgat attgctgaaa tagaaaggac attgccaaaa
4851 gaagagtaca gggtgccgaa actgccacgc atcaagcccg cctccgaagt
4901 ggatgacgat cactatggtg aaagtcagca aactttggca gagattgaaa
4951 gacgtaatgt ctgggccagt aaagatgacg ctgttgcagt tgaatctcca
5001 ccaccgggct atcctctcgg gccaattgag gctagggagt tagcgccgtt
5051 tgagtggagt agaccagatt atgagcctcc gaaacctaag aagtcattgt
5101 ttggcagact caagtcacaa gccaaggaag aagctaaccc ttcttctcct
5151 cgcaatgaca ttagaagatc atcttttagt agctttcgta gatagacatc
5201 tgtagactca ctaagagcca acgcagcgcc actagtgcat cgaatcctgg
5251 gaaacaggca cggagaataa aatccggtaa gctcgggaag ccgtcaactt
5301 ccgccgtatt gatgaaaaca acttggccga cgctgttaat aaccttagca
5351 tcttgagttc tactaaaaat tagatagttt tccgcctctt ccaaaagttg
5401 ccaccttttg gaatgtgaga tagatgggga gaggttgcct tgaataagca
5451 actgttgatg tctgctggta ttgagtccaa tgatcaaaac tcacgttgct
5501 tctgacgtat acactgcccc tgattcaaca gggtaaacaa atttgcgcca
5551 cctcgatgag atgagagtga agcgcggagt aaagagttgc tcctactttt
5601 gtaggttgca actctgggga gttttgtagt aggccaaaag ccaaactagt
5651 tcttcctcgt acggaaacaa caacaggtat gattgttcgg acatcattgg
5701 cactagttgc caatgtacag atggtctaac agataccccc cctctgctcg
5751 ggtttaaatg tcagcgctgg ctcttcagcg acaacaaggg ggcgttcctg
5801 cttgcctccc aatggatcct gcaggaacaa gtcttcgaat ctttatgaga
5851 tttgtggacc tctttgttgt taaggtggcg aaag