Sequence of DPV Papaya ringspot virus

Papaya ringspot virus strain Avinashi coat protein gene, partial cds.

ACC No: HM454196

Dated: 2010-10-21 | Length: 858 | CRC: -83323425

                
ID   HM454196; SV 1; linear; genomic RNA; STD; VRL; 858 BP.
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AC   HM454196;
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DT   21-OCT-2010 (Rel. 106, Created)
DT   21-OCT-2010 (Rel. 106, Last updated, Version 1)
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DE   Papaya ringspot virus strain Avinashi coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-858
RA   Salma M., Kumar K., Angappan K., Balasubramanian P.;
RT   "Cloning of PRSV genes from the Tamil Nadu isolates";
RL   Unpublished.
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RN   [2]
RP   1-858
RA   Salma M., Kumar K., Angappan K., Balasubramanian P.;
RT   ;
RL   Submitted (02-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL   Center For Plant Molecular Biology And Biotechnology, Department Of
RL   Biotechnology, Tamil Nadu Agriculture University, Marudamalai Main Road,
RL   Coimbatore, Tamil Nadu 641 003, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /organism="Papaya ringspot virus"
FT                   /strain="Avinashi"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Tamil Nadu"
FT                   /collection_date="Mar-2009"
FT                   /PCR_primers="fwd_name: coat protein forward primer,
FT                   fwd_seq: tccaaraatgaagctgtggatgt, rev_name: coat protein
FT                   reverse primer, rev_seq: gttgcgcatacccaggagag"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>858
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ADO33172.1"
FT                   /translation="SKNEAVDVVLNDKLKEKEKERDKEREKEKKDKKDASDGGYVSTST
FT                   KTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKAVLNLNHLLQYNPQQIDISNTR
FT                   ATQSQFEKWYEGVRNDYALSDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDY
FT                   PIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDF
FT                   YEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSL
FT                   LGMRN"
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SQ   Sequence 858 BP; 299 A; 147 C; 212 G; 200 T; 0 other;

hm454196 Length: 858  21-OCT-2010  Type: N  Check: 9314  ..

       1  tccaagaatg aagctgtgga tgtggttctc aatgataagc tgaaggagaa
      51  agaaaaagaa agagataaag agagagaaaa agaaaagaaa gacaagaagg
     101  atgctagtga cggaggttat gtgtcaacta gcacaaaaac tggagagaga
     151  gatagagatg tcaatgctgg gactagtggt acattcacag ttccaagaat
     201  caagtcattt actgataaaa tgattttgcc cagaattaag gggaaagctg
     251  tccttaattt gaatcatctt cttcagtata atccacagca aattgacatc
     301  tcaaacactc gtgccacaca atcacagttt gagaagtggt atgagggagt
     351  gaggaatgac tatgccctta gtgataatga aatgcaagtg atgttaaatg
     401  gcttaatggt ttggtgtatc gaaaatggta catctccaga catatctggt
     451  gtctgggtca tgatggatgg tgagactcag gtcgattacc caattaaacc
     501  attaattgaa catgcaactc cttcatttag gcaaatcatg gctcatttca
     551  gtaacgcggc agaagcatat atcgcgaagc gaaatgcaac tgagagatac
     601  atgccgcggt atggaatcaa gagaaatttg actgacatta gcctcgctag
     651  atatgctttc gatttctatg aggtgaactc aaaaacacct gatagagctc
     701  gagaggctca tatgcagatg aaggcagctg cactgcggaa cacaaatcgc
     751  agaatgtttg gaatggacgg cagtgtcagt aacaaggaag aaaacacgga
     801  gagacacaca gtggaagatg tcaatagaga catgcactct ctcctgggta
     851  tgcgcaac