Sequence of DPV Great Island virus
Great Island virus isolate CanAr 42 segment 2, complete sequence.
ACC No: HM543466
Dated: 2010-11-19 | Length: 2794 | CRC: 1575216862
ID HM543466; SV 1; linear; genomic RNA; STD; VRL; 2794 BP.
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AC HM543466;
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DT 13-SEP-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE Great Island virus isolate CanAr 42 segment 2, complete sequence.
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KW .
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OS Great Island virus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
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RN [1]
RP 1-2794
RX DOI; 10.1099/vir.0.024760-0.
RX PUBMED; 20739272.
RA Belhouchet M., Mohd Jaafar F., Tesh R.B., Grimes J., Maan S.,
RA Mertens P.P.C., Attoui H.;
RT "Complete sequence of Great Island virus and comparison with the T2 and
RT outer-capsid proteins of Kemerovo, Lipovnik and Tribec viruses (genus
RT Orbivirus, family Reoviridae)";
RL J. Gen. Virol. 91(Pt 12):2985-2993(2010).
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RN [2]
RP 1-2794
RA Belhouchet M., Mohd Jaafar F., Mertens P.P.C., Attoui H.;
RT ;
RL Submitted (14-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL Vector-Borne Diseases, Institute for Animal Health, Ash Road, Woking,
RL Surrey GU24 0NF, United Kingdom
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FH Key Location/Qualifiers
FH
FT source 1. .2794
FT /organism="Great Island virus"
FT /segment="2"
FT /isolate="CanAr 42"
FT /mol_type="genomic RNA"
FT /country="Canada"
FT /db_xref="taxon:204269"
FT CDS 19. .2745
FT /codon_start=1
FT /product="VP2"
FT /note="subcore shell T2 protein"
FT /db_xref="GOA:E1AA90"
FT /db_xref="InterPro:IPR002614"
FT /db_xref="InterPro:IPR016029"
FT /db_xref="UniProtKB/TrEMBL:E1AA90"
FT /protein_id="ADM88593.1"
FT /translation="MANPQNRVQTERQQSNSSPYLRGDEVHDDPGIALSVFALQEIIRK
FT VRESQTSLRNEGREVNPAPPEIEQIFSALSDLRDERPYRIERRLPTYYRFESSQSQERF
FT FRVDSHFERIAAPVDNTTLEEPARLMSLVLARVDTIREAGSFLLYNAPTHFIDGREIID
FT ADGLGVDVSGLLRLVEPRVRHLLQRQIDQLTVLNQDQEDTMVDTYPGACPDAVFRVHRA
FT LTAHVVHHQRDDYRNAMQWLQAYGEYKRIDFSRSLLTDVFSPDTVYIQSYQLPANPQLL
FT WEVPRCGIPNLVLNAALGVPQGTYITPNPRITSITIASRVTTTTSFAQLLGTIPTAAQM
FT DDVRKIYLALMFPNQILLDIRSEPGHQVDVVAQSVAGVLGKLLFSYGPALFNITPHTAR
FT ALDRACASFLQMATDDRRTIRHGPSGRPLDFVITQGQRAFDCNQLAQNPARGNGYAGWG
FT VDAVGDHPTPYPHVRRRIQYLGYVPEDVIDERFCGDDLRYPLHETMCEALAISGHVNER
FT NYVEMMRQHHVVRFAHLSQVINRDLVSAFSLPDERFNMLAAGVPRDATGPDGPLVLDIS
FT YMAIIHAFRLRFLPVSRPERIVYQPMLESVYASHLSLAKLHANNLQTFVTANSESFVEA
FT RPLDTWRAVYPRLPEPVRQIFDLTGQHSFVTGRDIGLWLRSPLVQDSLFLLCARTAWQA
FT VDDPADIGFTRDVYIHRQPAPEYPLEDVRQFRRDAVYFTNMLEARPANGNRVILDRVIM
FT QQRAGAGRLRMSIRELLDDGLFVQIGSALRPITLSIHHGLPPEETLRALPFEYRRESAN
FT GPTARVTLQMLRPVSAFFMLYNADEQAFPDEMIDLVPKMSLVSLYVQQPPVERVSYDTA
FT LSVINRDFVSFRSRVRLMDLSAAFDAGSQYALPSNAM"
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SQ Sequence 2794 BP; 600 A; 851 C; 758 G; 585 T; 0 other;
hm543466 Length: 2794 19-NOV-2010 Type: N Check: 1232 ..
1 gtaaaacttc tgggagcgat ggcaaatccg caaaatcgag tgcaaacaga
51 aagacagcag agcaacagct caccatatct aagaggcgat gaagtacacg
101 acgaccctgg aatcgcattg tctgtcttcg ccctacaaga gatcatccga
151 aaagtccgag agtcacagac ttcactgcgc aatgaggggc gtgaggtcaa
201 ccccgcgccc cccgagattg agcaaatctt ttcggcgctg agcgacctgc
251 gcgatgagag accctatcga atagaacgga ggctacccac gtattacaga
301 ttcgagtcgt ctcaatcgca ggagcgtttc ttccgagtgg atagccactt
351 cgaaaggatc gccgcaccag ttgataacac gactctggag gagccagcca
401 ggctgatgtc tttagtgctt gcgcgggtag acaccatacg cgaggccgga
451 tctttcctcc tttacaacgc gcctacgcac ttcattgatg gacgtgaaat
501 aatcgacgcc gacggcttag gcgttgacgt ctccggtctg ctccgccttg
551 tcgagccgag agttcgtcac ctgctgcaga gacagataga ccagctgacc
601 gtcctgaatc aggaccagga ggacaccatg gtggatacct accctggcgc
651 atgccccgac gctgttttcc gagtgcaccg cgctctcaca gcccacgtgg
701 tgcatcacca gcgggatgat tacagaaacg cgatgcaatg gctgcaggcc
751 tacggagagt acaagcgtat agacttctcg cgatcgctgc tcacagacgt
801 attttcccct gacacggttt acattcagag ttaccagctg cccgccaacc
851 cgcagctcct atgggaggta ccgcggtgcg gaatcccaaa tcttgtgttg
901 aatgcggcgc tcggcgtgcc acaaggaacg tatattacgc ccaacccaag
951 gatcacgtcg atcacgatcg cttcgcgtgt cacaactacc acctcgtttg
1001 cgcagttgct cgggaccatt cccaccgcgg cccagatgga tgacgtgcga
1051 aagatctatc tagcgttgat gttcccgaac cagatcctgc tcgacattag
1101 atcggagccc ggacatcagg ttgatgttgt cgcgcagtcc gtcgcagggg
1151 tcttgggtaa gttgctcttc tcttatggac cagcactgtt caacattacc
1201 ccccacacgg ccagagctct tgaccgcgcc tgcgcttctt ttctgcaaat
1251 ggcgacagac gacaggcgca ccatccgcca tgggccctca gggcgacctc
1301 tcgactttgt catcacgcag ggacagcgtg cgttcgactg caaccagctc
1351 gcccagaacc ccgctcgggg caacggttat gcgggctggg gagttgacgc
1401 cgtgggtgac catccgactc cgtacccgca tgtgagacgt cgtattcagt
1451 atctcggcta tgtcccagaa gatgtaatcg atgagaggtt ctgcggcgac
1501 gacctgcgct acccgcttca tgaaacgatg tgcgaggctc tagcgatctc
1551 gggtcacgta aacgagagga actacgttga gatgatgcgg cagcatcacg
1601 tcgtgagatt cgcgcatctc agccaagtta tcaatcggga cctcgtatcc
1651 gccttttccc taccggatga gagattcaac atgctcgcgg cgggcgtccc
1701 acgggatgcc accggaccgg atggaccgct cgtgctcgac ataagctaca
1751 tggctatcat acacgcgttc cgcctgcgct ttctcccagt ctccaggcca
1801 gagcgtattg tctatcagcc catgctcgaa tccgtctacg cctcccacct
1851 ctcactggca aaacttcacg cgaacaattt acagacgttt gtcacagcaa
1901 actcggagag cttcgtggag gcgcggcctc tggacacttg gagggccgtc
1951 tatccccgct tgcccgagcc cgtccgccaa atttttgacc tcacaggtca
2001 gcattcgttc gtgacgggac gtgacatcgg attatggctg cgctcacccc
2051 tggtacagga ttcgctcttc ctgctgtgcg ctcgaacggc ttggcaggca
2101 gtggacgacc ctgcggacat cggctttacg cgcgacgtct acattcaccg
2151 ccagccagct ccggaatacc cgttggagga cgtgcgccaa ttccgacgag
2201 acgcggtcta tttcacgaat atgctggagg cgcgaccagc aaacggcaat
2251 cgagtgatcc tggaccgggt aatcatgcag cagcgagctg gggcgggacg
2301 tctacggatg tctatccgcg aactactcga cgacggcttg tttgtgcaaa
2351 tcggatcagc cctgcgaccg attactctga gcattcatca cggactgccg
2401 ccggaggaga ccctgcgcgc cttacccttc gaatatcgtc gcgagagtgc
2451 gaacggccct acggcacgtg tcacccttca gatgctccgg cccgtttccg
2501 ccttcttcat gctgtacaac gcggacgaac aggcgttccc cgacgagatg
2551 atcgacctcg tccctaagat gtcactcgtg agcctatacg tacaacagcc
2601 ccccgtggag cgcgtcagtt acgacacggc gctgagcgtc ataaatcgcg
2651 actttgtttc gttccgatct cgcgtgcgcc tgatggattt gtcagctgca
2701 ttcgatgcgg ggagccagta tgctcttccc tctaacgcga tgtagggatt
2751 cagccccccg cgcgttgcgt gaacagggcc agggtgcaag atac