Sequence of DPV Aguacate virus

Aguacate virus strain VP-175A segment S, complete sequence.

ACC No: HM566139

Dated: 2011-05-27 | Length: 1830 | CRC: -1113499893

                
ID   HM566139; SV 1; linear; genomic RNA; STD; VRL; 1830 BP.
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AC   HM566139;
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DT   20-APR-2011 (Rel. 108, Created)
DT   27-MAY-2011 (Rel. 109, Last updated, Version 2)
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DE   Aguacate virus strain VP-175A segment S, complete sequence.
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KW   .
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OS   Aguacate virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
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RN   [1]
RP   1-1830
RX   PUBMED; 21325481.
RA   Palacios G., Travassos da Rosa A., Savji N., Sze W., Wick I., Guzman H.,
RA   Hutchison S., Tesh R., Lipkin W.I.;
RT   "Aguacate virus, a new antigenic complex of the genus Phlebovirus (family
RT   Bunyaviridae)";
RL   J. Gen. Virol. 92(PT 6):1445-1453(2011).
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RN   [2]
RP   1-1830
RA   Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA   Travassos da Rosa A., Lipkin W.;
RT   ;
RL   Submitted (19-JUN-2010) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 West 168th
RL   Street, 17th Floor, New York, NY 10032, USA
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CC   GenBank Accession Numbers HM566137-HM566139 represent the complete
CC   genome of Aguacate virus strain VP-175A.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1830
FT                   /organism="Aguacate virus"
FT                   /segment="S"
FT                   /host="Lutzomyia sp."
FT                   /strain="VP-175A"
FT                   /mol_type="genomic RNA"
FT                   /note="serogroup: Aguacate"
FT                   /db_xref="taxon:1006583"
FT   gene            36. .866
FT                   /gene="NS"
FT   CDS             36. .866
FT                   /codon_start=1
FT                   /gene="NS"
FT                   /product="nonstructural protein"
FT                   /protein_id="AEB70970.1"
FT                   /translation="MTSYLFDTPVIVRPNGYFDREVYVTYMAHNKYCEHPVSVHNCMEI
FT                   PVKNFGVSLLHKESLSDFYILGLLPFRWGDRMGNSRVTRESFPFMKDLLKDINDMHDSE
FT                   FFRSFLPNVKKALSWPLGYPTLEFIRMTRSDLDLPHFKEISANATLIMQMGQPALDLDQ
FT                   GFVNAHKRIVMESITRGFGHKDFPGKNIIFEVASLQCVRLLNAVPADLLYCQVPNSLTS
FT                   TVMKHRSILEDHPQQPLGNQKWTPDPDSWLLDDQAATLHEEFALILSESEDDED"
FT   gene            complement(1041. .1778)
FT                   /gene="NP"
FT   CDS             complement(1041. .1778)
FT                   /codon_start=1
FT                   /gene="NP"
FT                   /product="nucleocapsid"
FT                   /protein_id="AEB70971.1"
FT                   /translation="MADFERLAIEFSEAGVNIADVVNWVNEFAYQGFDAKRVLELLQQR
FT                   GGSSWQEDARKMIVLALTRGNKIEKMILKMSEEGKKTVLALKKKYQLKSGNPGRDDLTL
FT                   SRVAAALAGWTCQALPHVENFLPVTGEAMDALSPGFPRCLMHPSFAGLVDTTLPPETQD
FT                   AILAAHSLFLVQFSKVINPSLRGKPKGEVVASFKQPMLAAVNGGFIGPDKRRKMLQSLG
FT                   VVDVNGVPSEAVKVAANKFRSSQ"
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SQ   Sequence 1830 BP; 496 A; 500 C; 354 G; 480 T; 0 other;

hm566139 Length: 1830  27-MAY-2011  Type: N  Check: 4284  ..

       1  acacaaagac cccccgtgat ttctcaaaca acaagatgac tagctatcta
      51  ttcgacacac ctgtcatagt gaggcccaat ggttactttg accgagaagt
     101  ctatgtgaca tatatggctc acaataagta ttgtgaacat cctgtgtcag
     151  tacataactg catggagatt cctgtcaaaa actttggagt ctctctgctg
     201  cataaggagt ctctgtctga cttctacatt cttggcctcc taccattcag
     251  gtggggagat agaatgggca actccagggt cacccgggaa agcttcccat
     301  tcatgaaaga cttactcaaa gacatcaatg acatgcatga ctcagaattt
     351  tttagatcct tcctccccaa cgtgaaaaag gcattgtcgt ggccacttgg
     401  ataccctact cttgagttca ttagaatgac aagatcagac cttgaccttc
     451  cacactttaa ggaaatctct gccaacgcca cactaattat gcagatgggt
     501  cagccagcac ttgacctcga ccaagggttt gttaatgccc acaagagaat
     551  agtgatggag tccataacta gagggtttgg tcataaagac ttcccaggga
     601  agaatataat attcgaagtt gcttcactac agtgtgttag acttcttaat
     651  gctgtccctg cagatctctt gtattgtcag gtgccaaact ctctcacttc
     701  cacagtgatg aagcacagat ccatcttaga ggaccaccct cagcagccct
     751  taggcaatca gaagtggaca ccagatcctg attcctggct tctggatgac
     801  caagctgcca ctctgcatga agagttcgct ctaatcttat ctgagtctga
     851  ggatgatgag gattgacacg ctgccgaatc cccctgatct taatcccccc
     901  tccccctaat cacatgtatg tacatatatt gatttagatc acattcccat
     951  gtatatagcc ccaccaaacc ccatcgccca acacccaaac ccccagccca
    1001  agccctcacc cacaaaaccc acccctccct ttcaggcagc ctattgagag
    1051  ctcctgaatt tgttggcagc cactttaaca gcctctgagg gcacaccatt
    1101  cacatcaaca accccaagag attggagcat cttcctcctc ttgtctggcc
    1151  cgataaaccc accattgact gctgccagca ttggctgctt gaacgaagct
    1201  acaacctctc cctttggctt gcctctcaga ctagggttta tcaccttcga
    1251  aaattgtacc aagaagaggc tatgagcagc cagtatggca tcctgagttt
    1301  caggcgggag agttgtgtcc acaagcccgg caaagctggg atgcattaag
    1351  catcttggaa atccaggaga taaggcatcc attgcttcgc cggtcactgg
    1401  cagaaagttc tctacatgag gtaatgcctg gcaagtccag ccagctagag
    1451  cagcggcaac acgagacagg gtgagatcgt ctcttccagg atttccagac
    1501  ttcaactgat acttcttctt cagggccaag acagtcttct tcccttcttc
    1551  tgacatctta agaatcatct tctctatttt gttccctcta gtcaaggcca
    1601  atacaatcat cttcctagca tcttcttgcc aggatgagcc acctctctgt
    1651  tgtagcagtt caagcaccct cttggcgtca aatccctgat aagcaaattc
    1701  attaacccaa ttcacgacat ctgctatatt aacacctgct tcactaaact
    1751  caatagctag tcgctcaaag tcagccattg caagaattaa ttcacttgat
    1801  aattaagaag taattcgggg ttctttgtgt