Sequence of DPV Chagres virus
Chagres virus segment M, complete sequence.
ACC No: HM566146
Dated: 2012-05-03 | Length: 4398 | CRC: -1766343348
ID HM566146; SV 1; linear; genomic RNA; STD; VRL; 4398 BP.
XX
AC HM566146;
XX
DT 03-MAY-2012 (Rel. 112, Created)
DT 03-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE Chagres virus segment M, complete sequence.
XX
KW .
XX
OS Chagres virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RP 1-4398
RA Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA Travassos da Rosa A., Lipkin W.;
RT "Genetic diversity of the Phlebovirus genus";
RL Unpublished.
XX
RN [2]
RP 1-4398
RA Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA Travassos da Rosa A., Lipkin W.;
RT ;
RL Submitted (19-JUN-2010) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 West 168th
RL Street, New York City, NY 10032, USA
XX
CC GenBank Accession Numbers HM566146-HM566148 represent the complete
CC genome of Chagres virus.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4398
FT /organism="Chagres virus"
FT /segment="M"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:629727"
FT CDS 35. .3949
FT /codon_start=1
FT /product="glycoprotein"
FT /protein_id="AEL29641.1"
FT /translation="MYIEIVSVMLLASTVYCAYILTASRPKGTTKICLSNLTPYNSLTS
FT YWNNLNSDLENGDRQCSVGTSGMSYTTNSTIMSLIREVQISQAHITLTCKPLEAEDEKI
FT SMRFDGLADDFHYPSVLNCENSSLSLGPIPNIVPDMGDLIREDANDKIGFLRDRLASME
FT ERLVSETKLLEAEREIRNQELNDHSERYHFNDVRLKAHEDDIKDKDDKISEQKHIIAML
FT SKNITILHDKLNKMSINPRAEMKVIPTVVSVALLSSSLTSAALSPHIRNRIGDGKYKLE
FT DTDEESCRPVTYGSICPGFDLLTRSPHYPFFKSHYFHRSMLEALNDNIITKSDSAICTI
FT NSSKGVNCHEEKQYLKMMCPNQFRSAHYLDLKGKIRAVKCEEGYELTEDCFHCRKIKPD
FT TGKPLWKSSIALQDVVCQQGASTYSGPIVSPKEYCSIGGKKYKKCDSHSTKIETVPFVT
FT FQSVGKMYLESLQVRNTETMSKESFICYDHMGQVNGQSTGQADSRLLKKFDISKCKNVD
FT DTKSDICSGDELFCSAFQCSGENPVAQCIIAPGSGPLEVNINGVWLKPICVGFEKTIVK
FT KENKRQVINQQSSCSNCLTSCLQEGILVRSTGFKMISAVACSHGSCSSVAQQPSTEIMI
FT PYPGMMASAGGTVGIHVSHDDNSVSAKLSASCPPQDQCKAHSCSFCVEAIINYQCHSLI
FT SGFMVFCFVFSLLLMVVILIINILKALRVSPKVLKKPLLWVLALLRWMASRILLFFHVR
FT LVDLNQQIGWNGEVVVEQARPGRITRYMYTVGLLMSLITLVTPCSEVAVASSKMTRCST
FT KGSKTTCKVSGSVLLRAGVIGSEACLLIKGHSDTQKTLLSIRTESSEIVCREGQSFWTG
FT QFVSKCMSSRRCHGVGECIDQMCQEWKQNVTSSEFSSISKNERMSENVCIEQCGGLGCS
FT CFNINPSCLFVHAELMSTRKEAVRVFNCIDWVHKLNFVVTDAQGQSEKVSLGSMSSKMF
FT KWGTMTLSLDAEAITGSNSLLFMQNHNGGFALSDEQFSDIAREGYIGEIRCSSESAVIS
FT AHSSCKRAPNLIKYRPILDIAECSTNLIDPFSMFLRGSLPQTRNGKTFTATKDSKSVQA
FT LANAQINAQISLNIDDYDIEFKEDAPSCEAVFLNVSGCYSCNLGAQVCIKVSISEQGVF
FT HAHSADNVVQIGFHVLASRKEYCQIVHFDSPHIDISLMYSCGLDERPIELKGSLIAIMP
FT YDLRNNTVGASTVVNPRQGSWSFSNWAGGLISWIGGPLKSIFLIMVYIVASILGILVFL
FT YISKRLISSAIMKLIARKTK"
XX
SQ Sequence 4398 BP; 1406 A; 885 C; 958 G; 1149 T; 0 other;
hm566146 Length: 4398 03-MAY-2012 Type: N Check: 6980 ..
1 acacaaagtc ggtgcaaatt tttctgaatt caaaatgtat atcgagattg
51 tttcagttat gcttttagca tcaacagtct actgtgctta tattcttact
101 gcttcacgac ccaaagggac gactaagata tgcctcagca acttgactcc
151 ttacaattct ctaacctctt attggaataa cttaaattca gatcttgaaa
201 atggcgatag acaatgcagt gttggaacca gtggcatgtc atatacgact
251 aattccacga ttatgtcact gatcagggaa gtgcagattt ctcaagctca
301 catcactctg acctgtaagc cattagaggc tgaagatgag aaaatatcga
351 tgagatttga tggccttgca gatgattttc attatccatc tgtgctaaac
401 tgtgagaact cttccttgag tcttggccca atccctaata ttgtgccaga
451 tatgggagac ctgataagag aggatgctaa tgacaaaatt gggtttctca
501 gagacaggct agctagcatg gaagaaagac tcgtatctga aacaaagctc
551 ctggaggcag agagagaaat aagaaaccaa gaattgaatg accacagtga
601 gagatatcat ttcaatgacg ttcgtctaaa ggcccatgag gatgacataa
651 aagataagga tgataaaatc tcagaacaaa aacatattat agctatgctc
701 agcaagaaca taactatcct gcatgacaag ctcaacaaga tgtccataaa
751 tccacgagca gaaatgaagg tcattccaac tgttgtctca gttgctcttc
801 tctcatcatc actcactagt gctgctcttt cgccacatat aagaaatcgg
851 attggcgatg gaaaatacaa gcttgaggac acagatgaag aaagttgtag
901 accagtcact tatggctcaa tatgtccagg ctttgacttg ctcacgagaa
951 gcccgcacta tccttttttt aaatcacact actttcacag aagtatgcta
1001 gaggccctta atgacaatat catcaccaaa tctgattctg caatctgcac
1051 tatcaattcc tcaaaagggg tgaattgtca tgaggagaaa caatatctca
1101 agatgatgtg tcctaatcaa ttcagatctg ctcattactt ggacttgaag
1151 ggcaagatca gagctgtcaa atgtgaagaa ggctatgaac tcactgagga
1201 ctgcttccac tgccggaaga ttaagccaga tacagggaag cctttatgga
1251 agtcctcaat cgcactacaa gatgtagtat gtcagcaggg agcaagcact
1301 tactcaggcc caattgtttc tcccaaagaa tattgctcaa ttggtggaaa
1351 gaaatacaaa aagtgcgatt ctcactcaac aaaaattgaa actgtgcctt
1401 ttgtaacatt ccaatcagta gggaagatgt acttagagtc actccaggtg
1451 aggaatacag agacaatgtc aaaagagtct tttatatgtt atgatcacat
1501 gggtcaagtg aacgggcaga gcactggtca agctgattct agactgctta
1551 agaaatttga catatcaaag tgcaagaatg tcgatgacac aaagtctgac
1601 atctgttcgg gtgatgagct cttttgttca gcatttcaat gctcaggaga
1651 aaatcctgtt gctcagtgca taatagcacc aggatctgga ccactggagg
1701 tgaatatcaa cggtgtgtgg ctaaagccca tctgtgttgg ttttgagaaa
1751 actatagtta agaaggagaa taagagacag gttattaacc agcaatcatc
1801 atgcagtaat tgtctgacaa gctgcctcca ggagggcata ctagtcagaa
1851 gcacagggtt caagatgata tctgcagttg catgttcaca tggctcttgc
1901 tcgtctgtcg cccagcagcc atctactgaa atcatgatac cttatccagg
1951 aatgatggcc tctgctggcg gaactgttgg gattcatgtg tctcatgatg
2001 ataactcagt gagtgccaag ctgtctgcat cctgtcctcc acaagatcag
2051 tgcaaggctc actcatgctc attctgcgtt gaggcaatta tcaattacca
2101 gtgtcatagc ctaataagtg gatttatggt tttctgcttt gtctttagtc
2151 tcctcttgat ggtggttatc ctaataatta atatcctcaa ggctctgaga
2201 gtgagtccaa aggtgctcaa gaagccccta ctgtgggtct tagccctact
2251 caggtggatg gcctccagaa tactgctatt cttccatgtt agacttgtgg
2301 atttgaatca gcaaataggt tggaatggag aagtagtggt tgaacaagca
2351 cgtcctggga gaataacaag atacatgtac acagttggtc ttctaatgtc
2401 gctgataaca ctggtaacgc catgctctga ggtggctgtg gcaagctcaa
2451 aaatgacaag gtgcagcaca aaaggtagca agacaacatg caaagtctca
2501 ggatcagtgc tgttgagagc tggtgttatt ggatcagaag cttgcctcct
2551 cattaaaggg cactcagaca ctcaaaagac attactctca ataagaacag
2601 aatcaagcga gatagtatgc agagagggac agagcttctg gactggtcaa
2651 tttgtctcta aatgtatgag ctcaaggaga tgccatggtg taggtgagtg
2701 cattgatcag atgtgtcaag aatggaagca aaatgtgaca tcttctgaat
2751 tttcttctat atctaaaaat gagaggatgt ctgagaatgt atgtatagag
2801 cagtgtgggg ggctgggttg cagttgcttc aacataaatc cctcttgctt
2851 gtttgtacat gcagagctca tgtctaccag gaaagaggct gttcgcgtgt
2901 ttaactgtat agactgggtt cacaagctca attttgtggt cacagatgca
2951 caaggccaat ctgaaaaggt gtccctgggc tcaatgagct ccaagatgtt
3001 caaatggggc acaatgacac tgtccttgga tgccgaagca attacgggct
3051 caaatagcct tctttttatg caaaatcata atgggggttt tgctttgtct
3101 gatgagcagt tctctgatat tgcgagagaa ggctatattg gtgagatacg
3151 atgcagttca gagtctgctg tgatatctgc tcattcatca tgcaagagag
3201 cacctaatct catcaaatac aggcccatac ttgatattgc tgagtgctca
3251 actaacttaa ttgatccatt cagcatgttc ctgcgaggat cacttcctca
3301 gaccagaaat ggaaagacat tcacggcaac taaagactca aagtctgtcc
3351 aggcccttgc aaatgcacag ataaatgcac agatttcctt gaacattgat
3401 gactacgata ttgagtttaa agaagatgca ccaagttgtg aagcagtgtt
3451 cctaaatgtt agtggatgct attcctgcaa cctgggagca caagtttgca
3501 ttaaggtgtc aatatcagaa caaggagtat tccatgctca cagtgcagac
3551 aatgtagttc agataggatt tcatgtgtta gcatccagga aggaatattg
3601 ccagatagtg cactttgatt cacctcatat tgatatatcc ttgatgtata
3651 gttgtggcct agatgagaga ccaatagaac tgaagggttc attaatagcc
3701 attatgcctt acgacctccg aaataacaca gttggtgcct caacagtggt
3751 aaaccctaga caaggctcat ggtccttctc caactgggca ggagggctaa
3801 tcagctggat tggtggacct ctcaaatcaa tattcctcat catggtgtat
3851 attgtagcat cgatcttggg tatccttgtg ttcttgtaca tatccaagag
3901 gctaataagt tctgcaataa tgaagctcat agcccgcaag acaaagtaag
3951 agcaaagcca tggagaggca gctcaccaac ccaaaacaac aacacaataa
4001 gcaaatagaa ataaaatgaa acaattcaaa acaacaacaa aagaacacag
4051 aacaaacaat acaaaggtaa agaaaactaa aaaacagaga caaaacaaaa
4101 accaacacac aaacatgaca aaacaatcgg agaacaagca gtacagaaaa
4151 gaccaaaaac accacagact caaaagacaa acacaacaca caagaccaga
4201 acacacaacc attggcagca ctagccagta caataacatt gacaagttac
4251 aaagttgaga gcaatctttg ctgggttaag acgagagagt gacattcact
4301 gtgggacctc atgattctag aatgtgtgta tgtgacaagc atatgctaca
4351 tcatgaaagg gattttatta tatcatttag tagcaccggt ctttgtgt