Sequence of DPV Chagres virus
Chagres virus segment L, complete sequence.
ACC No: HM566147
Dated: 2012-05-03 | Length: 6414 | CRC: 1139413155
ID HM566147; SV 1; linear; genomic RNA; STD; VRL; 6414 BP.
XX
AC HM566147;
XX
DT 03-MAY-2012 (Rel. 112, Created)
DT 03-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE Chagres virus segment L, complete sequence.
XX
KW .
XX
OS Chagres virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RP 1-6414
RA Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA Travassos da Rosa A., Lipkin W.;
RT "Genetic diversity of the Phlebovirus genus";
RL Unpublished.
XX
RN [2]
RP 1-6414
RA Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA Travassos da Rosa A., Lipkin W.;
RT ;
RL Submitted (19-JUN-2010) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 West 168th
RL Street, New York City, NY 10032, USA
XX
CC GenBank Accession Numbers HM566146-HM566148 represent the complete
CC genome of Chagres virus.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6414
FT /organism="Chagres virus"
FT /segment="L"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:629727"
FT CDS 19. .6300
FT /codon_start=1
FT /product="polymerase"
FT /protein_id="AEL29642.1"
FT /translation="MNDIIEIQPTLNFGYNCRQLVHYDCSLYNLELPVFEIERCRGYVK
FT VDLDPAAHSAVSTIGSTLKKTMTIQDVNLSNLVHDVTVGHLTPFTDRQFCSVFPVTGDG
FT FDGHSPDLIIDCGNSNYYVVEFTTNRAGENAARGAALAKIAKYEIACQNRSVTNSLCLG
FT VISVHRDGVWSNLNLTEDDVNELSYRYRFALDLFSEVLKRCPEISSEDTEMSKQTKEIN
FT GILSLIDMDWKVTESSFPMFKEKVFNDFQSKGTDEQYISRIISKSLDECHKDLLKSSFL
FT GDELNHEQRVQKNREECEEKIDNFIKSYQSQTFLRGTTDHKSTVQIPPWVTLPGEKGKG
FT LGCLQSLNVEGNHPMAKIWLKVVRSAILEEIERMYDDPEAELEYAMSGSTSRPDERNKY
FT HRLRLDLDHDEELYAACLGVNGKSHRNDGMVNDARERSKKLFSIEHDTTPLETFLSERS
FT RDIFSDDNYLYNPLSADRELRVAAMSIHQPRLISNEGSNEFLENHDHYLRSPIGSWSQM
FT VSLIGAELSASVKQHVKPRSFIVKRLLDSGIFLLIKPTSSKSHIFVSFAMDKSLWHSNL
FT NMETVFKGYINAGDLMVTDFVSFKLSKLTNLCKTNSLLYTAICFWTEVYGFTPWNSMSL
FT LCNERSSVAQEICYMTKLSLLTLLEDKATTEELQTITRYIVMEGFVSQPELPKPHKMIQ
FT KLPYALRSELQVLLVSKLFMSMRRIAAQPFTLSKKGGQISWSHLFNPFTQSAIREIQPM
FT INCCYNGYFKNKEEETEPSVLSKMYKKIIELEHMCPEDDKYLGADDPEEPKMHEFSRSY
FT LMECIQHGKQLLARMHGHNFMDLIDEQIVREVSQLTIERLATLKATSNFNENWYVYKDV
FT KDKNYTRDKLLVKMSNYASEGNSIALQKFEDCMTTIEKRGSMHICLFKKQQHGGLREIY
FT VMGAEERIVQSLVESIAKSIGRFFPSDTLCNPANKTKIPESHGVRARKHCEGSVWTCST
FT SDDARKWNQGHFVTKFALMLREFTHPKWWPIIIRGCSMFTEKKMMMNLNFIRILDCHKE
FT LKTSDEFANTLFKAYHGEIEVPWAKPGRTYLTTKTGMMQGILHFTSSLLHTLHQEFIRS
FT LTFKVFNSKVHPEMSHKMVCDMMQGSDDSSMMLSFPSRDESTIAKCKVAASLCFRLKKK
FT LGIYIGIYPSEKSTSNTDFVMEYNSEFYFHSQHVRPTIRWISASCSLPEVETLVARQEE
FT AANLLTAITEGGGSFSLASCVQHAQCTLHYMLIGMGVSELFYEYKKAINRWKDPGIGFF
FT LMDNPYSAGLGGFRYNLYRAITGTNLQKIYAFFLKKVRGEKDDEDLDNLEPDSCSVSPG
FT GALILSSSLKWGSRQKFYRLRDRLNIPSDWLEKINENPAVLYRAPQNGEEIQLRIAEKV
FT HSPGVVSSLSSGNAVAKVMASSVYFLSAAIFQDAGKPEFRFLEPSKYSLLHKLAMYESF
FT YGHDDLSDDEMLFLFPNIEELRQLDLIVFNKGKIEFVPRSSQREATQTRVVIFDQHNTL
FT KVEAEKMVSDKWFGTQKSRIGSTGFNQEWTKLKTIVNWLTDTPKDTLSSSPFTNHVQIR
FT NFFARMESKPRAVKITGAPVKKRSGISKISLVIRDNFARCGFLKGIEDSEAIDRSNSSE
FT IMKHFMFTILHGPYTEETKKTYVEKVMRDLPDIGIRESDRKTKSNLLGIVQNWVNNPDG
FT TAQLIEEVGAGIIGGFVAPQKSALLNGKVIYYGHGSWRGFMDGNQVQIDIYNDKGFPPH
FT IESVTICEKTSIWDICGSIRSWADDIGIVNNVDCSRKASRSRLRYWLFEFRACGIDKPF
FT GSPVYVVRNNMIRIDPIKESNIRLKVRKSTLNLYVKQNDRDVHILSYTAGDNDLNPVAV
FT TRSSDPGVLSAISLFSKEPSSSWLRCDSLPTAYMGMILDLAEGVRVREHIDSPRLMQII
FT KTCTESSLRSKVGSVFQIVPGSHDAPQVFDIDSMIDIMIEDMNIESFTSITKDIAENLE
FT EAYTTELFDFTDIDLFGPAHHKEISDLAMVSHPLMDEFVEALINRATRKDIRKVLEQGV
FT CLKKNEMHFKQLFRCIGRDPSSIKIETGILDIEDETDFDVIG"
XX
SQ Sequence 6414 BP; 2083 A; 1200 C; 1497 G; 1634 T; 0 other;
hm566147 Length: 6414 03-MAY-2012 Type: N Check: 9771 ..
1 acacaaagat gcccaataat gaatgatata atagagatac agccaactct
51 gaacttcggg tataactgta ggcagttagt gcactatgac tgctctctat
101 acaacctaga gttaccagtg tttgagatag agagatgtag aggctatgtg
151 aaggtggatt tggatccagc agcccattct gcagtctcaa ctattggatc
201 cacactcaag aagactatga ctatacagga tgtcaatcta tccaatttag
251 tccatgatgt gacagtagga catctcacac cctttacaga caggcagttc
301 tgctctgttt tccctgtgac tggagatggg tttgatggcc actcacctga
351 cctaatcatc gattgtggaa actcaaatta ctatgtggtt gaattcacaa
401 caaacagggc tggagagaat gctgcaaggg gtgcagcact tgccaagata
451 gcaaagtatg agattgcttg ccaaaataga tctgtgacca actcattatg
501 tcttggtgtg atcagtgtgc acagggacgg agtctggtca aacttaaact
551 taactgagga tgatgtgaat gagctatcat acagatacag atttgcttta
601 gatctttttt ctgaggtgct gaagaggtgt ccagaaatta gctcagagga
651 taccgagatg tcaaagcaaa ccaaagagat taatggcata ttatctctta
701 ttgacatgga ctggaaggta actgagagtt catttccaat gttcaaagag
751 aaggtattta atgactttca atctaagggg acagatgagc agtacatatc
801 tagaatcata tcaaagtcac ttgatgagtg tcataaggat ctactaaaat
851 cctcatttct tggggatgag cttaatcatg aacagagggt gcagaagaac
901 agagaggaat gtgaggagaa aatagataat ttcataaagt catatcagtc
951 acaaacattc ctcagaggaa caacagatca caaatctact gtacagattc
1001 caccatgggt gacactgcct ggtgaaaagg gaaaaggact ggggtgcctc
1051 cagtctctga atgtagaggg aaaccatcca atggcaaaga tttggcttaa
1101 ggtggttagg tcagcaatac ttgaggaaat agaaagaatg tatgatgatc
1151 cagaagcaga attagagtat gcgatgtctg gctcaacctc acgacctgat
1201 gagagaaaca agtatcacag gctcagattg gatctagacc atgatgagga
1251 gctatatgca gcatgcctag gagtaaatgg gaagtcgcat aggaatgatg
1301 gaatggtaaa tgatgcaaga gagaggagta agaaattgtt ctctatagag
1351 catgacacaa cacctttaga aactttcttg tcagagagaa gtagagacat
1401 cttctctgat gacaactact tgtacaatcc cttatctgct gacagagagc
1451 taagagttgc agccatgagc atacatcagc ccaggttgat atcaaatgaa
1501 gggtcgaatg aatttctaga aaaccacgat cattatttaa gaagtccaat
1551 tggatcctgg tcacaaatgg ttagtctaat aggggctgaa ctatcagcct
1601 ctgtgaagca gcatgtcaag ccaagatcgt tcatagtcaa gaggctgcta
1651 gactcaggga tattcctgct cataaagcca acatcctcta agagtcacat
1701 atttgtatcc tttgcaatgg acaaatcact atggcactca aaccttaaca
1751 tggaaacagt attcaaaggc tatatcaatg ctggtgacct gatggtcact
1801 gactttgtat ccttcaagct cagcaagttg acaaatctct gcaaaaccaa
1851 ttctctacta tacacagcaa tatgtttctg gacagaagtt tatgggttta
1901 caccttggaa ctccatgtct ctattgtgca atgaaagaag ctccgtggca
1951 caggagattt gttatatgac caaactgtca ttgctaacat tgctggagga
2001 caaggcaacc acagaagaac tacagacaat aacacgatat attgtgatgg
2051 aaggattcgt ctcccagcct gaattgccaa aaccacataa gatgattcaa
2101 aagctccctt atgctctgcg tagtgaactt caagtgctct tagtgagtaa
2151 gttgttcatg tcaatgagaa ggatagcagc acagccattc accctaagta
2201 agaagggagg acaaatatca tggagccatc tattcaaccc cttcacacaa
2251 agtgccataa gggagattca gccgatgatt aattgctgct ataatgggta
2301 ctttaaaaac aaagaagaag agacagaacc ctctgtccta tccaagatgt
2351 acaagaagat aatagagctt gagcacatgt gtcctgaaga tgacaaatat
2401 cttggagcag acgacccaga agaaccaaaa atgcatgagt ttagcagaag
2451 ctacctaatg gagtgcatac agcatggcaa acaacttctg gcaagaatgc
2501 acggacacaa cttcatggat ctaatagatg agcagattgt cagagaggtc
2551 tcacagttga ctattgagcg cttggccact ctgaaagcaa ccagcaactt
2601 taatgagaac tggtatgtct acaaagatgt gaaggataag aactacacaa
2651 gagataagct tttggtcaaa atgtccaatt atgcatctga gggtaactca
2701 attgcattac agaagttcga agactgcatg accaccatcg aaaaaagagg
2751 ctcaatgcat atctgcctct tcaaaaaaca acagcatggc ggtttaagag
2801 agatctatgt gatgggagca gaagaaagga tagtccaaag tctagttgag
2851 tccatcgcaa agagtatagg aagattcttc ccatctgata cattgtgcaa
2901 ccctgctaat aagacaaaga tccctgaaag ccatggagtg cgagccagga
2951 agcactgtga gggatctgtc tggacatgct caacatctga tgatgcaagg
3001 aagtggaatc aggggcactt tgtgactaaa ttcgcattga tgctcagaga
3051 attcacacat cccaagtggt ggcccattat tataaggggc tgttcaatgt
3101 tcactgagaa aaagatgatg atgaacctga actttatcag gatattggac
3151 tgtcacaagg agctcaagac aagtgatgag tttgcaaaca ccctgtttaa
3201 ggcatatcat ggtgagatag aggtcccatg ggcgaaacct ggaaggacat
3251 atttgacaac aaagacaggg atgatgcaag gaattctaca tttcacatca
3301 tcattgctgc acaccctgca tcaagagttc atcaggtccc tcacatttaa
3351 agtgttcaac agtaaggtac acccggaaat gtctcacaaa atggtgtgtg
3401 atatgatgca gggatcagat gacagtagta tgatgctgag ttttccctca
3451 agagatgaga gtacaatagc aaaatgtaag gttgctgctt ccctgtgttt
3501 taggttgaag aaaaaacttg ggatctacat aggaatttat ccatcagaga
3551 agtcaacatc aaacactgat tttgtgatgg agtacaactc tgagttctat
3601 ttccactcac aacacgttag gccgacaatt agatggatat ctgccagttg
3651 cagtctccca gaagttgaga cactagtagc cagacaggaa gaggcagcga
3701 acctcctcac agccatcact gaaggcggtg gttcattctc tctggcatcg
3751 tgcgtgcagc atgctcaatg cactctgcac tacatgctta ttggaatggg
3801 agtgtcagag ctgttctatg agtacaagaa ggcaattaat agatggaagg
3851 atccaggtat agggttcttc ctgatggata atccgtattc tgctggactt
3901 ggaggattca gatacaactt atacagggct ataacaggga caaaccttca
3951 gaagatttac gcatttttct tgaagaaggt aagaggagag aaggatgatg
4001 aagatttgga caaccttgag cctgactcat gcagtgttag tccaggagga
4051 gcattgattt tgagctcttc tctcaaatgg ggttcaaggc agaaattcta
4101 caggctcaga gacaggctca acattccttc tgattggctt gaaaagataa
4151 atgagaatcc agctgtgctg tatagagcac cgcagaatgg agaagagata
4201 cagttgagaa tagcagagaa agtgcatagc ccgggagttg tatcctctct
4251 ctcatcagga aacgcggttg caaaagttat ggcctcttca gtatatttcc
4301 tttccgctgc tatattccag gatgcgggga agcctgagtt tagattcctt
4351 gagccatcta agtacagctt actgcacaag ctagctatgt atgagagctt
4401 ctatggccat gatgacctta gcgatgatga gatgctattc ttattcccaa
4451 atattgaaga gctcagacaa ttagatttaa ttgtattcaa taagggaaag
4501 atagagtttg ttccaagatc tagtcagaga gaggcaacac aaaccagagt
4551 ggtcatattt gatcaacaca atacacttaa agtggaggct gagaagatgg
4601 tatcggacaa gtggtttggg acacagaaga gcagaattgg gtctactggt
4651 ttcaatcagg agtggactaa gctgaagact attgtaaatt ggctaacaga
4701 cacaccaaag gacacactga gcagctcacc ttttactaat catgtccaga
4751 tacgaaattt ctttgccaga atggaatcca aaccaagagc agtgaagatt
4801 actggtgcac ctgtcaagaa gaggtctgga atcagcaaga tatctcttgt
4851 cataagggac aatttcgcaa gatgtggttt tttgaaaggc attgaggact
4901 ctgaagcaat tgataggtca aactcatctg agataatgaa gcacttcatg
4951 tttaccatac ttcatggacc ttatactgag gagaccaaga aaacttatgt
5001 tgaaaaagtc atgcgtgacc taccagatat aggaattaga gagtcagata
5051 gaaagacgaa gtcaaatctg ctagggattg tgcagaattg ggtgaacaat
5101 cctgatggaa cagcacagtt aatagaagag gttggtgcag gtataattgg
5151 aggttttgtt gctcctcaaa agagtgcatt attgaatgga aaagtcatat
5201 actatggaca tggctcatgg cgtgggttta tggatggaaa ccaagttcag
5251 attgatatat acaatgacaa aggatttcct ccccatattg agtctgtgac
5301 aatctgtgag aaaacatcaa tatgggacat atgtgggtca atcagatcct
5351 gggcagatga tataggaata gtcaataatg ttgactgctc tcgcaaagca
5401 tcaagatcaa gactaaggta ttggctattt gaattcagag cttgtggaat
5451 cgataaaccc tttggatccc ctgtatacgt tgtgagaaac aacatgataa
5501 ggatagaccc aatcaaggaa tccaacataa ggctaaaggt gagaaagagc
5551 actttgaatc tttatgtcaa acagaatgat agggatgtgc atattctttc
5601 gtacactgca ggtgataatg acctgaaccc agtagctgtt actcggagtt
5651 ctgatccagg agtactctca gcaatttcct tattctcaaa agaaccaagc
5701 tcaagctggc ttaggtgtga ttcactgccc actgcataca tggggatgat
5751 tttagattta gcagagggtg tgagagtgag ggaacacatt gatagcccaa
5801 ggctgatgca gataatcaag acgtgcacag agtcatccct tagatctaag
5851 gtaggcagtg ttttccagat tgtaccggga tcacatgatg caccacaagt
5901 atttgacata gactcaatga ttgacataat gattgaagat atgaacattg
5951 agagcttcac tagcatcacg aaggatatag ctgaaaatct agaagaagca
6001 tacacaactg aattatttga tttcactgac atcgacctgt ttggtccagc
6051 tcatcacaag gaaatatctg atctggcaat ggtatcccat ccactgatgg
6101 atgagttcgt tgaggcactg ataaatagag caacaaggaa ggacataagg
6151 aaggtgcttg agcaaggtgt gtgtctgaag aagaacgaga tgcacttcaa
6201 gcagctcttc aggtgtatag gtcgagaccc atcatcaatt aagatcgaaa
6251 ctggaattct tgacattgag gatgaaacag acttcgatgt cataggatga
6301 tcaaatcatg gacagagtga taatacatgg aaacagggac gcaacgtccc
6351 tctcatggcg atgaagtgtg atattcaatt attttaatcc atgagatttg
6401 ggcggtcttt gtgt