Sequence of DPV Chagres virus

Chagres virus segment S, complete sequence.

ACC No: HM566148

Dated: 2012-05-03 | Length: 1790 | CRC: 1487950548

                
ID   HM566148; SV 1; linear; genomic RNA; STD; VRL; 1790 BP.
XX
AC   HM566148;
XX
DT   03-MAY-2012 (Rel. 112, Created)
DT   03-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE   Chagres virus segment S, complete sequence.
XX
KW   .
XX
OS   Chagres virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
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RN   [1]
RP   1-1790
RA   Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA   Travassos da Rosa A., Lipkin W.;
RT   "Genetic diversity of the Phlebovirus genus";
RL   Unpublished.
XX
RN   [2]
RP   1-1790
RA   Palacios G., Savji N., Sze W., Hutchinson S., Tesh R.,
RA   Travassos da Rosa A., Lipkin W.;
RT   ;
RL   Submitted (19-JUN-2010) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 West 168th
RL   Street, New York City, NY 10032, USA
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CC   GenBank Accession Numbers HM566146-HM566148 represent the complete
CC   genome of Chagres virus.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1790
FT                   /organism="Chagres virus"
FT                   /segment="S"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:629727"
FT   CDS             60. .800
FT                   /codon_start=1
FT                   /product="nucleocapsid"
FT                   /protein_id="AEL29643.1"
FT                   /translation="MANYQDIAVEFAGDLPTEAIIRTWVEEFAYQGFDASQVLRILAER
FT                   GGANWREDAKKMIILSLTRGNKPSKMMERMSEAGKATVSSLMTRYNLKSGNPGRNDLTL
FT                   SRVATALAGWTCQAIPIVQDFLPVTGVVMDGLSPAYPRPMMHPCFAGLIDPSLPKKTVD
FT                   ELVAAFSLYMLQFSKTINPSLRAAKREDIISSFRQPMQAAINSTFLTGAQRRQFLRTLG
FT                   VVNDNLEPSQNVVAAARVFRGTGV"
FT   CDS             complement(956. .1756)
FT                   /codon_start=1
FT                   /product="nonstructural protein"
FT                   /protein_id="AEL29644.1"
FT                   /translation="MNYYATDIPLVSFSACQLRRIQVDYIPFNKQATEPHSNYSGMEFP
FT                   VTSYTQVPGIRSKLQDFYNHNQLPVSWGSGRPGVVNDSSSKYESLIKEISKLELRDVVK
FT                   HNEPNIRRALCWPYSYPTLIFFDLCGNKDSMGPWMFKGAAMTSFMRAGKCAQIDRSLVN
FT                   FHRMIVREAIELGENEAEFTGKDIIMECCSVICRRLLRAYPFDRTYDKPHSRLLTILED
FT                   FDNHFKFDYGESSELRVAVDEFDIHMKRREAEETFWGSDFTDSD"
XX
SQ   Sequence 1790 BP; 462 A; 401 C; 383 G; 544 T; 0 other;

hm566148 Length: 1790  03-MAY-2012  Type: N  Check: 6637  ..

       1  acacaaagac cctcgaagtc tatacaactt actattatct aaaccacatt
      51  ccggaagcca tggctaacta tcaggacatt gctgttgagt ttgcgggtga
     101  tctgcctact gaagctatca tcagaacctg ggtagaggag tttgcctatc
     151  aagggtttga cgcttcccag gtactgagaa tcttggctga gagaggtgga
     201  gctaactggc gtgaggatgc caagaaaatg attattctct ctctcactag
     251  gggcaataaa ccctctaaga tgatggagag aatgtctgag gctggaaagg
     301  caactgtgtc gtcgctaatg actcgctaca accttaaatc tggaaacccc
     351  gggaggaatg atctgactct gtctagagtg gcaactgccc ttgctggatg
     401  gacatgtcag gcaattccaa ttgtccaaga ctttcttcca gttactggtg
     451  tagtgatgga cggtctctct cctgcttacc cgaggccgat gatgcatcct
     501  tgctttgcag gactgattga tccgtctttg cccaagaaga cagttgatga
     551  gcttgttgca gcgttcagct tatacatgct tcagttttca aagactataa
     601  atccttctct ccgtgctgct aagagagagg acatcatctc aagcttccgt
     651  cagcccatgc aagcagctat caacagcaca ttcctaactg gtgctcagcg
     701  tcgccagttc ttgagaactc tcggtgtggt caatgacaat cttgagccat
     751  ctcagaatgt cgttgccgct gcccgggtct tcagaggaac tggagtctga
     801  gctgctgcca tctccctccc ttatttgtga ttaattggca ttccattttg
     851  tttgttaaat ttaattaata taatttgatt aataatttgt atatagagca
     901  attaggctaa attggggtta aattggcttt aattaaccag gggaaactgg
     951  cagtatcaat cactatctgt gaaatcagaa ccccagaaag tctcttctgc
    1001  ctctcttctt ttcatatgaa tgtcaaactc atctacagca actctcaact
    1051  ctgagctctc accatagtca aatttaaagt gattatcaaa gtcttctaaa
    1101  atcgttagca atcgtgaatg tggcttgtca taagtcctat caaaagggta
    1151  tgctctaagc aatctcctac atattacact acagcattcc attattatgt
    1201  cctttcctgt aaactcagcc tcattctctc ccaactcaat agcctctcgc
    1251  actatcatcc tgtggaagtt cactaggctt ctatctatct gagcacattt
    1301  gcctgctcgc ataaaggagg tcattgctgc tcccttgaac atccatggcc
    1351  ccattgaatc tttgttccca cacagatcaa agaatattag tgttggatat
    1401  gagtaaggcc agcaaagggc tctcctgata tttggttcat tgtgttttac
    1451  tacatcgcgc agttcaagtt ttgagatctc ttttattagt gactcatatt
    1501  tacttgacga gtcattgaca actccaggcc tccctgatcc ccatgagact
    1551  ggtagctggt tgtgattgta aaaatcttgt agtttagagc gaattcctgg
    1601  gacctgtgtg tatgaggtaa ctgggaactc catgccagag tagtttgagt
    1651  gtggttcagt agcctgttta ttgaacggga tataatctac ctgaatgcgc
    1701  cgtaactgac aggctgaaaa tgaaaccaac ggtatgtctg tggcatagta
    1751  gttcattttt aactgatttt cgttcgaggg gtctttgtgt