Sequence of DPV Avian gyrovirus 2
Avian gyrovirus 2, complete genome.
ACC No: HM590588
Dated: 2011-04-11 | Length: 2383 | CRC: 1290032597
ID HM590588; SV 1; circular; genomic DNA; STD; VRL; 2383 BP.
XX
AC HM590588;
XX
DT 11-APR-2011 (Rel. 108, Created)
DT 11-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE Avian gyrovirus 2, complete genome.
XX
KW .
XX
OS Avian gyrovirus 2
OC Viruses; ssDNA viruses; Circoviridae; Gyrovirus; unclassified Gyrovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2383
RX PUBMED; 21442232.
RA Rijsewijk F.A., Dos Santos H.F., Teixeira T.F., Cibulski S.P., Varela A.P.,
RA Dezen D., Franco A.C., Roehe P.M.;
RT "Discovery of a genome of a distant relative of chicken anemia virus
RT reveals a new member of the genus Gyrovirus";
RL Arch. Virol. 0:0-0(2011).
XX
RN [2]
RP 1-2383
RA Rijsewijk F.A.M., Teixeira T.F., dos Santos H.F., Cibulski S.P.,
RA Varela A.P., Dezen D., Franco A.C., Roehe P.M.;
RT ;
RL Submitted (25-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL Microbiol. Dept. Vir. lab., Fed. Univ. UFRGS, Avenida Sarmento Leite 500,
RL Porto Alegre, RS CEP 90050-170, Brazil
XX
FH Key Location/Qualifiers
FH
FT source 1. .2383
FT /organism="Avian gyrovirus 2"
FT /host="Gallus gallus"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /isolation_source="serum of diseased chicken in poultry
FT production unit"
FT /collection_date="14-Jul-2006"
FT /clone="Ave 3"
FT /db_xref="taxon:1002273"
FT polyA_signal 27. .32
FT repeat_region 224. .353
FT /rpt_type=DIRECT
FT /rpt_unit_range=224. .245
FT /note="imperfect 21nt repeats with putative enhancer
FT function"
FT TATA_signal 402. .409
FT CDS 450. .1145
FT /codon_start=1
FT /product="putative dual-specificity protein phosphatase"
FT /note="VP2"
FT /protein_id="AEB00702.1"
FT /translation="MSSGGLGDCSACETRAAGGSELPLRQEGQLGPSGAGSTGKTLNAD
FT PPLSPTSNNYSVRTINGIRASNKFVSASRNDLDRDPNWYRVNYNYSIATWLRQCARSHD
FT EICTCGRWRSHWFQEASGLVTQETQTDQLARDLRRLQRKGEAAKRKLDYLKRRGTPHKK
FT TKTVTWQDYDDDDLVDALASTTEDDGTGDTDCDEDAIPGGVNFDMRVEDPLIAALRGGS
FT STHTRAPMW"
FT CDS 577. .951
FT /codon_start=1
FT /product="VP3"
FT /note="putative apoptosis function"
FT /protein_id="AEB00703.1"
FT /translation="MQTPRSRRQATTTRSELLTAYEHPTSSCPPAETTSIEIQIGIGST
FT IITLSLPGYASVRVLTTRSAPADDGGVTGSRRLADSSHRRPRRTSSPEIYVGFSAKERR
FT QKENLITLREEGPPIKKLRL"
FT CDS 953. .2335
FT /codon_start=1
FT /product="putative nucleocapsid"
FT /note="VP1"
FT /protein_id="AEB00704.1"
FT /translation="MARLRRRRPRGRFGFYHRGRWHWRHRLRRRRYSRRGKFRYARRRS
FT FDRRVKRRIFNPHPGSYVVRLPNPYNKLTLFFQGIVFIPEAQAFVKSTYTKTNLTVCHV
FT ASINVNLREFMLATMPLDAKSKIGGPNPYPQHLQGCQWSAQTTQDAWPYSAGMSETKRP
FT SVPPSEWWRWALLVMHPRAPGRFYNAPKLMTLDAMGDLLGGWQLFRHVRTKFRVLATMG
FT QGAFSPVASLLVQNDYWSRGHLEGFPVKGAPPMCTMQRKTQQYGNVEANAPADEQWLPV
FT NPPDPPVYPNQGGCSQNVAPGIYRLAGLQDSSRCFYSKACFPSFAALSAMGAPWSFPST
FT QKPIQRGSFNKHSITGTGDPQGRRWLTLVPKGVEWITDDTMEQTQLDTDIATLFLAQGS
FT PMWAPYKFGTFHKAMAITAMQTTPWCVVKVRSIWQLGNQRQPYPWQVNWYNEHTATDRY
FT NP"
XX
SQ Sequence 2383 BP; 637 A; 654 C; 624 G; 468 T; 0 other;
hm590588 Length: 2383 11-APR-2011 Type: N Check: 5801 ..
1 ggatcctccc ccccggaccc cccgtcaata aataattaaa taaagcaaat
51 tgaattattt atttattttc ggcgcgcgcg gcagcagcct gtacacagag
101 acgtcgctcg ggtcctccgg accctcgctc ctcaaccttt tcttattaaa
151 atcatcaccc agcgcgacaa acgccacaag gcgtggtaac caacgatatg
201 taagtaaact gagactcata ccggtacagg ggggtacgtc atcatgtaca
251 ggggggtacg tcaccatgta caggggggta cgtcaccatg tacagggggg
301 tacgtcacca tgtacagggg ggtacgtcac catgtacagg ggggtacgtc
351 acagccaatc agaattgagc acgcccagaa acgcccctgg gcgggcagat
401 cctatcaatt aggggatata agcagagcgc ataccggtcg gcagtaggta
451 tgtcatccgg cggtctcggg gattgcagcg cctgtgagac ccgagccgct
501 gggggcagtg aattgccgct taggcaagag gggcaacttg ggcccagcgg
551 agccggatcc acgggcaaga cactaaatgc agaccccccg ctctcgccga
601 caagcaacaa ctactcggtc agaactatta acggcatacg agcatccaac
651 aagttcgtgt ccgccagcag aaacgacctc gatagagatc caaattggta
701 tcgggtcaac tataattact ctatcgctac ctggctacgc cagtgtgcgc
751 gttctcacga cgagatctgc acctgcggac gatggaggag tcactggttc
801 caggaggcta gcggactcgt cacacaggag acccagacgg accagctcgc
851 cagagatcta cgtcggcttc agcgcaaagg agaggcggca aaaagaaaac
901 ttgattacct taagagaaga gggacccccc ataaaaaaac taagactgtg
951 acatggcaag attacgacga cgacgacctc gtggacgctt tggcttctac
1001 cacagaggac gatggcactg gagacacaga ctgcgacgaa gacgctattc
1051 ccggaggggt aaatttcgat atgcgcgtag aagatccttt gatcgccgcg
1101 ttaagaggag gatcttcaac ccacacccgg gctcctatgt ggtaaggcta
1151 ccaaaccctt acaataagct taccctcttt ttccaaggca ttgtgttcat
1201 tccggaggct caagcatttg ttaaaagtac ttatacaaag actaatctta
1251 cggtttgcca tgtagcctca ataaatgtta acctccgaga atttatgctt
1301 gctacaatgc ctttagatgc aaagagcaaa atcggaggcc ctaatcctta
1351 tcctcagcac ttgcaggggt gccaatggtc agcacaaacg acgcaggacg
1401 catggccgta ctcggcgggc atgtcagaga caaaaagacc cagcgtacca
1451 ccgagtgagt ggtggcgctg ggctctcctg gtgatgcacc ctagagcacc
1501 tggcagattt tacaatgccc ctaagctaat gactctggac gctatgggag
1551 acctcttagg gggctggcaa ctattccgtc atgttagaac caagttcaga
1601 gtgctggcca ctatgggcca gggtgcattc tcaccggttg caagcctcct
1651 tgtgcaaaat gactattgga gcagggggca cttagagggc ttcccagtga
1701 aaggtgcacc gcctatgtgc accatgcaaa gaaagactca gcaatacggc
1751 aacgtggagg cgaacgctcc agcagatgag cagtggctac cggtgaatcc
1801 cccagaccca ccagtgtacc ctaaccaggg aggatgctcc caaaacgtgg
1851 ctccaggcat ataccggctt gcaggcttac aagacagtag cagatgcttt
1901 tattcaaagg cttgtttccc cagctttgca gcgctttctg ctatgggggc
1951 accctggtca tttcctagca ctcaaaaacc cattcaaaga ggctcattta
2001 acaaacattc catcacgggg acaggggacc cccagggccg acggtggtta
2051 acacttgtgc ctaaaggcgt ggaatggatc actgatgaca ccatggaaca
2101 aacgcaactg gacacagaca ttgcaacact cttcttagct caaggcagcc
2151 caatgtgggc accctacaaa ttcgggactt ttcacaaggc aatggccata
2201 acagcaatgc agaccacccc ctggtgcgtg gtgaaagtac ggtccatctg
2251 gcagctcggc aaccaaagac agccgtaccc atggcaagtg aactggtaca
2301 acgagcatac tgcaacggac agatacaacc cgtaattggg ggggggggtt
2351 ttgccccccc cacaaacccc ccccccccgg ggg