Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Sathyamangalam polyprotein gene, partial cds.

ACC No: HM626466

Dated: 2010-11-10 | Length: 858 | CRC: -1897176220

                
ID   HM626466; SV 1; linear; genomic RNA; STD; VRL; 858 BP.
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AC   HM626466;
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DT   10-NOV-2010 (Rel. 106, Created)
DT   10-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE   Papaya ringspot virus isolate Sathyamangalam polyprotein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-858
RA   Ramaswamy N., Angappan K., Kumar K.K., Balasubramanian P.;
RT   "Molecular characterization of papaya ring spot virus isolates from Tamil
RT   Nadu";
RL   Unpublished.
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RN   [2]
RP   1-858
RA   Ramaswamy N., Angappan K., Kumar K.K., Balasubramanian P.;
RT   ;
RL   Submitted (01-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL   Centre for Plant Molecular Biology and Biotechnology, Tamil Nadu
RL   Agricultural University, Lawly Road, Coimbatore, Tamil Nadu 637001, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya"
FT                   /strain="PRSV-P"
FT                   /isolate="Sathyamangalam"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Tamil Nadu, Erode district"
FT                   /isolation_source="infected fruits and leaves"
FT                   /collection_date="28-Jan-2009"
FT                   /proviral
FT                   /PCR_primers="fwd_name: HRP 52, fwd_seq:
FT                   tccaaraatgaagctgtggatgt, rev_name: RKJ3, rev_seq:
FT                   gttgcgcatacccaggagag"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>858
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADP89518.1"
FT                   /translation="SKNEAVDVGLNDKLKEKEKEKDKEREKEKKDKKDAGDGGYVSTST
FT                   KTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKAVLNLNHLLQYNPQQIDISNTR
FT                   ATQSQFEKWYEGVRNDYGLSDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDY
FT                   PIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDF
FT                   YEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSL
FT                   LGMRN"
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SQ   Sequence 858 BP; 297 A; 147 C; 216 G; 198 T; 0 other;

hm626466 Length: 858  10-NOV-2010  Type: N  Check: 9200  ..

       1  tccaagaatg aagctgtgga tgtgggtctc aatgataagc tgaaggagaa
      51  agaaaaagaa aaagataaag agagagaaaa agaaaagaaa gacaagaagg
     101  atgctggtga cggaggttat gtgtcaacta gcacaaaaac tggagagaga
     151  gatagagatg tcaatgctgg gactagtggt acattcacag ttccaagaat
     201  caagtcattt actgataaaa tgattttgcc cagaattaag gggaaagctg
     251  tccttaattt gaatcatctt cttcagtata atccacagca aattgacatc
     301  tcaaacactc gtgccacaca atcgcagttt gagaagtggt atgagggagt
     351  gaggaacgac tatggcctta gtgataatga aatgcaagta atgttgaatg
     401  gcttaatggt ttggtgtatc gaaaatggta catccccaga catatctggt
     451  gtctgggtta tgatggatgg tgagactcag gtcgattacc caattaaacc
     501  attaattgaa catgcaactc cttcatttag gcaaatcatg gctcacttca
     551  gtaacgcggc agaagcatat atcgcgaagc gaaatgcaac tgagagatac
     601  atgccgcggt atggaatcaa gagaaatttg actgacatta gcctcgctag
     651  atatgctttc gatttctatg aggtgaattc aaaaacacct gatagagctc
     701  gggaggctca tatgcagatg aaggcagctg cactgcggaa cacaaatcgc
     751  agaatgtttg gaatggacgg cagtgtcagt aacaaggaag aaaacacgga
     801  gagacacaca gtggaagatg tcaatagaga catgcactct ctcctgggta
     851  tgcgcaac