Sequence of DPV Salobo virus

Salobo virus segment S nonstructural and nucleocapsid genes, complete cds.

ACC No: HM627184

Dated: 2012-05-03 | Length: 1727 | CRC: 736953262

                
ID   HM627184; SV 1; linear; viral cRNA; STD; VRL; 1727 BP.
XX
AC   HM627184;
XX
DT   03-MAY-2012 (Rel. 112, Created)
DT   03-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE   Salobo virus segment S nonstructural and nucleocapsid genes, complete cds.
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KW   .
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OS   Salobo virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
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RN   [1]
RP   1-1727
RA   Palacios G., Savji N., Sze W., Tesh R., Lipkin W.;
RT   "Genetic diversity of Phleboviruses";
RL   Unpublished.
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RN   [2]
RP   1-1727
RA   Palacios G., Savji N., Sze W., Tesh R., Lipkin W.;
RT   ;
RL   Submitted (03-JUL-2010) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 West 168th
RL   Street, New York City, NY 10032, USA
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CC   GenBank Accession Numbers HM627183-HM627185 represent sequences
CC   from the 3 segments of Salobo virus.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1727
FT                   /organism="Salobo virus"
FT                   /segment="S"
FT                   /mol_type="viral cRNA"
FT                   /db_xref="taxon:427316"
FT   CDS             38. .853
FT                   /codon_start=1
FT                   /product="nonstructural"
FT                   /protein_id="AED98381.1"
FT                   /translation="MNFLYEMPVILSYGGMNTPEAEVGYYPYAGFTTYRVSVHNEMEIP
FT                   VGTYRQVMDHRDNFEDFYRVGHFPFRWGPGCFNSRVDSQTCPDFDTMLKDMMLFPREAY
FT                   TRSFLPNISEAISWPLGYPCSEFIQLSNEARSDLSLRSWKSAAATCILRMNPWVSTFDQ
FT                   AFVEAHKMVVAEANNRGLSRMLFPGFDIVKEVAIVQLVRAMNALDIDMTYSRIPTVLTN
FT                   MLEKHKAVFENENPDLLGNRKWIPSEDTWFDGLNYNGESEFDSSDSDAA"
FT   CDS             complement(946. .1683)
FT                   /codon_start=1
FT                   /product="nucleocapsid"
FT                   /protein_id="AED98382.1"
FT                   /translation="MADYARIAVEFSGEAINLAEIQGWVTDFAYQGFDARRIVELVQQK
FT                   GGAGWKDDVKMMIVLCLTRGNKPTKMVEKMSPEGKVKVNRLISTYGLKSGNPGRDDITL
FT                   SRVAAAFAGWTCQALNVLHPYLPVSGTTMDAISPNYPRAMMHPCFAGLVDQTIPTEYCQ
FT                   TIVDAMSVFLIQFSRTINKNLRGQPKEVVIESFIQPMQAAMSSSFIAPAERRKLMIALG
FT                   IVDANGKPSANVAAAAAVFPRLL"
XX
SQ   Sequence 1727 BP; 445 A; 439 C; 389 G; 454 T; 0 other;

hm627184 Length: 1727  03-MAY-2012  Type: N  Check: 3355  ..

       1  acacaaagac cccctagatt ttataaagat tagcaaaatg aatttcctct
      51  acgagatgcc tgtcatactc tcctatggag gtatgaacac acctgaggca
     101  gaagtgggtt actaccccta tgctgggttc acaacataca gagtgtcggt
     151  acacaacgag atggagatac cagttggtac ttacaggcag gtgatggatc
     201  accgtgacaa ctttgaagac ttctacagag ttggccattt cccattccgt
     251  tggggaccag gatgtttcaa ctcacgtgtg gattcacaga cctgcccaga
     301  ctttgacaca atgctcaaag acatgatgct tttcccgagg gaagcataca
     351  cacgatcgtt cctgccaaac atctctgagg ccatctcatg gccactggga
     401  tatccttgtt ctgagtttat acaactcagc aatgaagcaa gatctgatct
     451  gtctctgagg tcatggaagt cagctgcagc tacttgcata ctaaggatga
     501  acccctgggt ttcaactttt gaccaagcat ttgtggaagc tcacaaaatg
     551  gttgtagctg aagctaacaa cagaggtctg tccaggatgc tctttcctgg
     601  atttgacatt gtcaaagagg ttgctatagt ccaacttgta agagcgatga
     651  atgctctgga catagacatg acttacagca ggattcctac tgttttaaca
     701  aacatgctgg agaaacacaa ggctgtgttt gagaatgaaa atcctgacct
     751  ccttgggaat cgcaagtgga tcccatcaga agacacctgg tttgatggac
     801  tgaactataa cggagagtct gaatttgact cctcagacag cgatgctgcc
     851  tgagcccccc tcccccctaa tccctcagcc aatatggcca tgtacatacc
     901  ccgcccccac tttccccttc ccccctgcag cctcagtgtc tgcttttaga
     951  gcaggcgagg gaagacagct gcagcagctg ccacattggc agatggcttg
    1001  ccattggcat caacaattcc cagagcaatc atgagcttcc tcctctcagc
    1051  tggggcaatg aatgagctag acatggcagc ctgcatgggc tggatgaagg
    1101  actcaatcac tacctcttta ggctgccctc ttaggttctt gttgatggtt
    1151  ctagagaact gaatcaggaa aacactcatg gcgtcaacga ttgtctggca
    1201  gtactcagta gggattgtct ggtctaccag tccagcaaag catgggtgca
    1251  tcattgctct ggggtagtta ggagaaattg catccatggt ggttccagaa
    1301  acaggcagat aagggtgcag cacattcagt gcctggcagg tccatccagc
    1351  aaaggcagca gcaactcttg agagggttat gtcatccctt cctgggtttc
    1401  cgctcttcag accgtaggtc gagatcagac ggttgacctt cacctttcct
    1451  tcgggagaca tcttctccac cattttcgtg ggcttattcc ctctagtaag
    1501  gcacaggaca atcatcatct tcacatcatc tttccatcca gctcctcctt
    1551  tttgctgtac tagctccaca atcctgcggg catcaaagcc ttgataagca
    1601  aaatcagtca cccaaccttg tatttcagcg aggttgatgg cttctcctga
    1651  aaactcaaca gcaatcctag cgtaatcagc cattatttct tctttgatta
    1701  ttcacaattt tataggggtc tttgtgt