Sequence of DPV Salobo virus
Salobo virus segment L polymerase gene, complete cds.
ACC No: HM627185
Dated: 2012-05-03 | Length: 6427 | CRC: -1084454525
ID HM627185; SV 1; linear; viral cRNA; STD; VRL; 6427 BP.
XX
AC HM627185;
XX
DT 03-MAY-2012 (Rel. 112, Created)
DT 03-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE Salobo virus segment L polymerase gene, complete cds.
XX
KW .
XX
OS Salobo virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RP 1-6427
RA Palacios G., Savji N., Sze W., Tesh R., Lipkin W.;
RT "Genetic diversity of Phleboviruses";
RL Unpublished.
XX
RN [2]
RP 1-6427
RA Palacios G., Savji N., Sze W., Tesh R., Lipkin W.;
RT ;
RL Submitted (03-JUL-2010) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 West 168th
RL Street, New York City, NY 10032, USA
XX
CC GenBank Accession Numbers HM627183-HM627185 represent sequences
CC from the 3 segments of Salobo virus.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6427
FT /organism="Salobo virus"
FT /segment="L"
FT /mol_type="viral cRNA"
FT /db_xref="taxon:427316"
FT CDS 18. .6272
FT /codon_start=1
FT /product="polymerase"
FT /protein_id="AED98383.1"
FT /translation="MDSIISKQQPLEEGFNRRPLVDYDELLLEVPLPEFSVEKSGDGLV
FT VNLDLNNMDETSTVGSTLKPDLKIKASKVPNFVHDFTFGHLCSSTDRTFMSYFPMVNDG
FT FNHLSPDVIMATPAGSTFVVEFTTFRGDSNGARNAAMLKIGKYEVACQNRAIGGRLMLA
FT VISVHRHGIWTNLELEEEDINELVFRYRLALSIFSEIQIHCPTTSADEDELTKLEREVL
FT GMVGNISIDWGKTSSAFPSFNKELFDNFAREPDSEYVSRVISNSLKKSQDKMFKSSFFD
FT VDDKDERVEMNCAEAETKIKEFIDKYNSDNPDQRPICDHKSTVQIPPWVTLEGPEGKGL
FT SPLKGTVVTGDHPMVGIWQAVVRAADSGEIERMDDDPTLELEMALDGAKDRPDERNKYH
FT RVRIVTTPYETEYIAMHGVNGKEHRDKTLVKMNREKSKKAFSLNHDTSDLDRFIKDDST
FT RIFRCAPDLYCPLSEDEELRKEAMSIHQPTLHYKEGGNEFTEVHNNLLRTPLGSWTQMV
FT SVIGAELSASVKQHVKQDFFIVKRLLGSEVYLLIKPTCSRSHIFVSFAVKKSHVDSFIT
FT VDGVFKHFVDAGDMFLTDFVSFRQSKLTNLCKSFSLFESSLAFWTECHGGKPWLMIDPE
FT IMQELPDARVMTKLSVLTMLEDKACTEELQTIMRYVVMEGFVSEPEIPKPQKMLVKLPK
FT ILRSELQVLLANNFFNTVRKIARKPFLLRKKDGNIQWSGLFNPITGQPTKELQVVVSAC
FT YNGYFKNKEEETEPQALSGMYKKIIELEDQRPASDEFLGWEDPEDPKMHEFSRSYLKEV
FT CRHGIQLLKRVYGQNVLEQIDDQITREVSSLTLERLATLKATSQFTEDWYVYKDVKDKN
FT YTRDRLLVKMSKFAMEDKTLAIEKFEECMSTIESKGSMHICLFKKQQHGGLREIYVMGA
FT EERIVQSIVETIAKSIGKFFPSDTLCNPSNKTKIPETHGYRARQHCKSQVWTCATSDDA
FT RKWNQGHYVTKFALMLCEFTHPRWWPIIIRGCSMFTNKKMMMNLKFMKILDTHLELDTR
FT DEFSQKLFKAYHGEESVPWAEAGKTFLKTTTGMMQGILHFTSSLLHTLHQEYVRSLTFK
FT IFNMKVGEDYGSKIVCDMMQGSDDSSMLISFPSENPEALRKLKVAAALCFRLKKELGIY
FT IGIYPSEKCTSNTDFVMEYNSEFFFHSQHVRPTIRWVAACCSLPEVETLVARQEEASNL
FT LTAVSEGGGSFSLAAILQQAQCSLHYMLMGMGVSSLFKTFARAAIKWKDPGLGFFLLDN
FT PYSAGLGGFRFNLFKAITRTNLMRVYAYFMKKVKGDSSTDEVPESCSVSPGGALILSSS
FT LRWGSKKKFFNLRARLNIPEDWKDRINAKPEVLYRAPKSGEEIILRIAEKVHSPGVVSS
FT LSSGNAVSKVMASSVYFLSATIFHDTGRPEFSIIEDSKYSLLQKMAAYEGFNGHNDLEP
FT DDILFLFPNVEELESLDAIVFDKGRIQLRNRSSRREATQSRVTVFDEVKTMRTSPEKLV
FT SDKWFSTQKSKIGDTAFKIEWAKLKAVIKWLRDTPDETLEASPLDSHIQIKNFFARMEG
FT KSRTVRITGAPIKKRSGVSKIAMVIRDNFCKSGFLAGVEDVAGATRGLLSESLKHVLFC
FT ILQGPYTDESKLMKCYQVLQNTTPIELKPSDGGSKSNKVAILQRYSSSEENVIESLEEV
FT GAGVLGGYVKAQKSKMVNGTIHYYGVGIWRGLMDGVQVQIEIDNRVGAVPQIQTVSIHG
FT SQSPWEVSQSIRMWADDMGVRNDQDLASKHKNAKFWMHNFKVFGPSRSFGAPVFILNKP
FT MYDLRTLKEDQIKMKIRRSTINLFTTTPSGRDLHILSYTASDSDLSPISLVNCNAKEIE
FT DIMTTFTKEPSRSWIKCKPLELKYMESVLEVCEGKRRIHTIDGERLGVIIKTCCESSLR
FT TKVGTIFIGAPKHTEMPQLDMESIIDLMIEDSENNVFEEVVRSMSDDIGTFPLDDEFDV
FT SDINLFGPAHYKEIGALAMVSHPLMDKFIDYLINNVGRSPLRRVLESGVCQSRHKTLCC
FT LLYRALNRPVENLRVEELEDEENSEPVEDDMLG"
XX
SQ Sequence 6427 BP; 1972 A; 1236 C; 1582 G; 1637 T; 0 other;
hm627185 Length: 6427 03-MAY-2012 Type: N Check: 760 ..
1 acacaaaggc gcccaatatg gatagtataa taagcaaaca acaaccactt
51 gaagaaggct ttaacaggag acctctggtg gattatgatg aattactgtt
101 agaggtgcct ctgcctgaat tttcggtaga gaagagtggg gatggtttgg
151 ttgttaatct tgatctcaac aacatggatg agacatccac tgttggatca
201 actttaaagc ctgatctcaa aatcaaggct tcaaaggtcc ccaacttcgt
251 tcatgatttt acttttggcc atctgtgttc aagcacagac aggactttca
301 tgtcttactt cccgatggtc aacgatggct tcaaccacct cagccctgat
351 gtgattatgg caactcctgc tgggtcaact tttgttgtgg agttcacaac
401 tttcagagga gactcaaatg gtgccagaaa cgctgcaatg ctgaaaatcg
451 gaaagtatga agttgcctgt cagaaccgtg ctattggtgg gaggctgatg
501 ttagctgtta tctcagtgca tcgtcacggc atctggacta atctggagtt
551 ggaagaggag gatattaatg aattggtttt tagataccgt cttgccttgt
601 ccattttctc tgaaatacag atccactgcc ccacaacctc tgctgatgag
651 gacgaactga ccaagcttga gagagaggta cttgggatgg ttggtaatat
701 atctattgac tggggcaaga cctcaagtgc cttcccatct ttcaataagg
751 aattatttga caattttgcc agggaaccag actcagaata tgttagcaga
801 gtaatttcaa attctcttaa gaagtcacag gacaagatgt tcaaatcctc
851 attttttgat gtagatgata aagatgagag ggttgaaatg aactgtgctg
901 aggcagaaac gaagatcaag gagtttattg acaagtataa ttctgacaat
951 cctgaccaga gacctatctg tgaccataag tctactgttc agattccgcc
1001 atgggtcact ttggaggggc cagaggggaa agggctctct ccacttaaag
1051 ggactgtggt gacaggagat caccctatgg tggggatatg gcaagctgtt
1101 gttagagcag cagactcagg agagattgaa aggatggatg acgacccaac
1151 tcttgagtta gaaatggctt tggatggagc aaaagatagg ccagatgaaa
1201 gaaacaagta tcatcgagtg agaattgtga cgacgccata tgagacggaa
1251 tacatagcaa tgcatggagt aaacggtaaa gagcatcgag acaaaacatt
1301 agttaagatg aacagagaga agagtaagaa agccttcagc ctgaaccatg
1351 acacgtcaga cttggacagg ttcataaagg atgacagtac caggattttt
1401 agatgtgctc cagatcttta ttgccctctc tctgaagatg aggagctgag
1451 gaaagaggcc atgtccattc accagccaac tctccattat aaagaaggtg
1501 gaaacgagtt cacagaggtt cataataacc tcttaagaac acctcttggc
1551 tcatggacac aaatggtgag tgtcataggt gctgaacttt cagcttcagt
1601 aaagcagcat gtgaaacagg acttctttat agtaaagagg cttctaggtt
1651 ctgaagtcta tttgctgata aaacctacat gctcaagaag tcatatattc
1701 gtgtcatttg ctgtcaagaa gagtcatgtt gatagcttta tcacagtgga
1751 tggggtgttc aagcattttg tggacgcagg cgatatgttt ctgactgact
1801 tcgtgtcttt tagacagagc aaactcacca atctttgtaa gagcttttca
1851 ttatttgagt catcacttgc tttctggact gaatgtcatg ggggaaagcc
1901 ttggctaatg atagacccag aaataatgca agagctccca gatgccagag
1951 tgatgacgaa gttatccgtt ctgacaatgc tggaagacaa ggcctgcact
2001 gaagagctgc aaaccataat gagatatgtg gttatggaag gctttgtctc
2051 tgagcctgag attcctaagc cccagaagat gctggtgaaa ttgcccaaaa
2101 tacttagatc tgagttgcag gttctactgg caaacaattt cttcaacaca
2151 gtaaggaaga tagcaagaaa acccttcctg cttaggaaga aagacgggaa
2201 catccagtgg tctggattat tcaatcccat aaccggacaa ccaacaaaag
2251 aactgcaggt ggtggtaagt gcttgttata atggctactt caagaacaag
2301 gaagaagaga ctgaaccaca agcgctgtca gggatgtaca aaaagattat
2351 agagcttgaa gatcagcgcc ctgcaagtga tgagtttctg gggtgggagg
2401 atccagagga ccccaagatg catgaattta gcaggagcta tttaaaagaa
2451 gtttgcaggc atgggatcca gcttctgaag agggtctatg gccagaatgt
2501 gctggagcag atagatgacc aaataactag agaggtaagc tcactaactc
2551 tagagaggct tgccacgtta aaagctacca gtcagttcac agaagactgg
2601 tatgtgtaca aggacgtaaa ggataaaaac tacaccaggg acaggcttct
2651 agtcaaaatg tccaaatttg ccatggagga caagactttg gctattgaga
2701 agtttgagga gtgcatgtca accatagagt caaaagggag catgcatatc
2751 tgtctgttca agaagcaaca gcatgggggg ttgagagaga tatacgtcat
2801 gggagctgag gaaaggattg ttcaaagtat tgttgagaca atagcaaaga
2851 gtattgggaa gttttttcct tctgacacat tgtgcaaccc aagcaacaag
2901 accaagatac ctgagactca tggttacaga gctaggcaac actgtaagtc
2951 tcaggtgtgg acatgtgcca cttctgatga tgccagaaag tggaatcagg
3001 gtcattatgt gacaaaattt gccctcatgt tatgtgagtt cactcatcct
3051 agatggtggc ctatcatcat tagagggtgc tccatgttta caaacaagaa
3101 aatgatgatg aacctcaaat tcatgaagat cctggacacc catcttgagc
3151 ttgacacacg agatgaattc tcccaaaagc tttttaaggc ttatcatggt
3201 gaggagagtg ttccttgggc cgaagcaggc aagactttcc taaaaacaac
3251 cacagggatg atgcaaggga tccttcattt cacttcatct cttctgcaca
3301 ctctacatca agaatatgtt cgctcattga cattcaaaat tttcaacatg
3351 aaagttggag aggattatgg ctctaagata gtctgtgata tgatgcaggg
3401 ttctgatgat agtagtatgc taatcagctt tccctctgaa aatccagaag
3451 ctctaagaaa gcttaaagtt gcagcggctc tctgctttag gcttaagaaa
3501 gaacttggga tatacatagg aatataccct tccgaaaagt gtacctccaa
3551 cactgacttt gtaatggaat acaactccga atttttcttc cattcacaac
3601 atgtgcgacc tacaatcagg tgggttgcag cttgctgctc tcttccagaa
3651 gtagagaccc tggtggccag acaagaggag gcttctaatt tgttgactgc
3701 agtttcagaa ggtggtgggt ctttttccct ggctgctata ctccagcaag
3751 cccaatgttc tctacactac atgttaatgg gaatgggagt ctcttcatta
3801 ttcaaaactt ttgccagagc agccataaaa tggaaggacc caggattggg
3851 attcttctta ttagacaacc cgtactctgc aggtctagga ggatttaggt
3901 tcaacttgtt caaggcaata actagaacaa atctcatgag ggtttatgct
3951 tacttcatga agaaggtgaa aggagattcc agtactgatg aggtccctga
4001 aagctgcagt gttagcccag ggggagcttt gattctaagc tcctctctaa
4051 gatgggggtc aaagaagaaa ttcttcaacc tacgagcaag attaaacatc
4101 cctgaagact ggaaagaccg cattaatgcc aagccagagg ttttatacag
4151 ggctccaaaa tcaggggaag agataatatt gagaattgct gaaaaagtgc
4201 atagcccagg ggttgtttca tcactatctt ctgggaatgc tgtctctaaa
4251 gtgatggcat catctgtata tttcctgtca gcaactatat ttcatgatac
4301 aggaagacca gagttcagca taattgaaga ctccaagtat agcctcctgc
4351 agaaaatggc agcctatgag ggtttcaatg gccacaatga tctggagcct
4401 gacgatattt tattcttatt tccaaatgta gaggagctag aatctttaga
4451 tgcaatagtg tttgataagg gaagaatcca gctgagaaac agatccagtc
4501 ggagagaggc cacacagagc agagtcactg tttttgatga ggttaaaaca
4551 atgagaacat ctccagaaaa gctggtgtct gacaagtggt tcagcacaca
4601 aaagagcaaa attggggaca cggcttttaa gatagaatgg gctaaactca
4651 aggcagtgat caagtggctg agggacacac ctgatgagac attggaggcg
4701 tctcctcttg acagccacat acaaataaaa aacttctttg cacgaatgga
4751 ggggaagtca agaacagtca ggatcacagg tgctcccatc aaaaagagat
4801 caggggtgag caaaattgcc atggttatac gggacaattt ctgcaagtca
4851 ggattccttg ccggagtaga ggacgtggca ggagccacca gaggcctttt
4901 gtctgaatca cttaagcatg tgctgttctg tatactgcag ggaccttaca
4951 ctgatgagtc aaaactgatg aaatgctatc aggtcctgca gaacaccacc
5001 cccatagagt tgaagccatc tgatggtggg tcaaaatcaa ataaagtggc
5051 aatcttgcaa aggtattcct caagtgagga gaatgttata gagagcctgg
5101 aggaggttgg agcaggggtt ctaggtggtt acgtcaaagc tcaaaaatca
5151 aagatggtaa atggcacgat ccattactac ggagttggga tctggagggg
5201 tttaatggac ggtgttcagg ttcagattga gattgacaac agggtgggtg
5251 cagtcccgca gatccagaca gtgtcaatac atggcagtca aagcccttgg
5301 gaagtctcac agagtatcag aatgtgggca gatgacatgg gggtcagaaa
5351 tgatcaagat ttagcatcaa aacacaagaa tgcaaagttc tggatgcaca
5401 actttaaggt atttgggccg tccaggtcgt ttggagcacc agtgtttatt
5451 ctgaacaagc caatgtatga tctgcggaca ctgaaggaag accagatcaa
5501 gatgaaaatt agaagaagca ccatcaattt gtttacaacg actccatctg
5551 gaagagacct gcacatactc tcgtacactg cctcagattc tgatctcagc
5601 ccaatatctc tggtgaactg caatgcaaaa gagattgagg acatcatgac
5651 aacatttaca aaggagccta gcagatcctg gataaaatgc aagcctcttg
5701 agttgaagta tatggagtca gttttagaag tttgtgaggg taagaggaga
5751 attcacacca tagacgggga aaggcttgga gtcataataa agacatgctg
5801 tgagtcttcc ttaaggacta aggttggcac catattcatt ggagcaccaa
5851 aacacacaga aatgccacag cttgatatgg aatccatcat tgatctaatg
5901 attgaggact cagaaaacaa tgtttttgag gaggttgtaa ggtcaatgtc
5951 agacgacatt ggaactttcc cccttgatga tgagtttgac gtttcagaca
6001 tcaacttgtt cggtccagcc cactacaagg agattggggc ccttgccatg
6051 gtatctcacc cgctgatgga caagttcata gattacctta taaacaatgt
6101 aggaaggagc ccactgagga gagttcttga aagtggagtc tgtcagtcca
6151 gacacaaaac cctgtgctgt ttgctgtata gggctctgaa tagacctgtc
6201 gaaaatctca gggtcgaaga gcttgaagac gaagagaaca gtgagcctgt
6251 ggaggatgac atgctgggct gagttctcct ggaagaacct gggagattag
6301 caatttgtga caacgacact acagaaggac atgctcaaat tatcaagaca
6351 gtagagaata tcaaaactag ccggttttaa gctagtttga tattctttac
6401 tgtctcaaca ttgggcggtc tttgtgt