Sequence of DPV Unnamed TGP carmovirus 1
TGP Carmovirus 1 isolate 06TGP01091, complete genome.
ACC No: HM640935
Dated: 2011-09-07 | Length: 3929 | CRC: -1162654369
ID HM640935; SV 2; linear; genomic RNA; STD; VRL; 3929 BP.
XX
AC HM640935;
XX
DT 13-MAR-2011 (Rel. 108, Created)
DT 07-SEP-2011 (Rel. 110, Last updated, Version 5)
XX
DE TGP Carmovirus 1 isolate 06TGP01091, complete genome.
XX
KW .
XX
OS TGP Carmovirus 1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-3929
RX PUBMED; 21762736.
RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Ding T.,
RA Roe B.A.;
RT "Detection of members of the Tombusviridae in the Tallgrass Prairie
RT Preserve, Osage County, Oklahoma, USA";
RL Virus Res. 160(1-2):256-263(2011).
XX
RN [2]
RP 1-3929
RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Roe B.A.;
RT ;
RL Submitted (07-JUL-2010) to the INSDC.
RL Biochemistry & Molecular Biology, Oklahoma State University, 246 NRC,
RL Stillwater, OK 74078, USA
XX
RN [3]
RC Sequence update by submitter
RP 1-3929
RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Roe B.A.;
RT ;
RL Submitted (13-MAY-2011) to the INSDC.
RL Biochemistry & Molecular Biology, Oklahoma State University, 246 NRC,
RL Stillwater, OK 74078, USA
XX
CC On May 13, 2011 this sequence version replaced gi:324984928.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3929
FT /organism="TGP Carmovirus 1"
FT /host="Lespedeza procumbens"
FT /isolate="06TGP01091"
FT /mol_type="genomic RNA"
FT /country="USA:Tallgrass Prairie Preserve, Oklahoma"
FT /lat_lon="36.83 N 96.39 W"
FT /isolation_source="upper leaves"
FT /collection_date="03-Jun-2006"
FT /db_xref="taxon:944580"
FT CDS 27. .2339
FT /codon_start=1
FT /transl_except=(pos:771. .773,aa:Gln)
FT /product="putative RNA dependent RNA polymerase"
FT /db_xref="GOA:F1BA29"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:F1BA29"
FT /protein_id="ADY69093.2"
FT /translation="MFRDLCRYASQIVVGSTVLAVNVSVLSVAVQLRGAVAVYEVASKC
FT VTALEDCVSDLRDSLKPVPDELYNPSLCAALRMNNTDTELTAEDLLTTDRVLVNTWETD
FT EAKFKYRYKARIQSGQRGRFMYELVAYGKNHFGRAPRCCDSNYLSVTRLLVNRCNELHL
FT TPTQTRNVVAEAVSLVFIPDEEEIRQTMLTNSHYAYMQRTRQSVVSTVEPWWKELLLGP
FT SNAKNWRRAWIEICGLPEKQAISFAKQGCLWRTRGVTTNIFRAHHPDVTECHEANVHVR
FT DTYLYGARLTNGLKIGVHRNDFPNLRRGVMERVYYVENSETKQLQSPITPVDGIYRSMK
FT YIRLKLGGYIGLHSRTPMQKCVDMYKGRKRRTYQRAMDECKLEPFNPRWAHVKNFLKRE
FT KLNLSAKPDPAARIISPRDPRYNIHLACYLKPFEHHLYRAIDNLWGQPTVMKGYTVEEV
FT GQLFHRSWSAFRKPVAVGFDMKRFDQHVSVAALQFEHAVYLQAFGYDAHLQRMLSLQLN
FT NMCNAYCKNGKLRYNKMGTRMSGDLNTSCGNVLLACAITYDICKRIGLKAHLLNNGDDC
FT VLILESEDLPRVEILDTLWAEYGFVCIVEKPVFEIEEIEFCQMHPVFANSGYVMVRNPH
FT VSIAKDQHSLIPWTNVKVAKQCLKAIGECGSSLTSGIPMVHAFYQCLLRNTSDVRINPN
FT LREASAAAYFGMGGRTRGTHSISERTRYSFYLAFGITPDEQRAFEDDWERETIVWEWAP
FT DGFVAANHACLQLISQS"
FT CDS 27. .773
FT /codon_start=1
FT /product="putative replication-associated protein"
FT /db_xref="UniProtKB/TrEMBL:F1BA30"
FT /protein_id="ADY69092.2"
FT /translation="MFRDLCRYASQIVVGSTVLAVNVSVLSVAVQLRGAVAVYEVASKC
FT VTALEDCVSDLRDSLKPVPDELYNPSLCAALRMNNTDTELTAEDLLTTDRVLVNTWETD
FT EAKFKYRYKARIQSGQRGRFMYELVAYGKNHFGRAPRCCDSNYLSVTRLLVNRCNELHL
FT TPTQTRNVVAEAVSLVFIPDEEEIRQTMLTNSHYAYMQRTRQSVVSTVEPWWKELLLGP
FT SNAKNWRRAWIEICGLPEKQAISFAK"
FT CDS 2312. .2515
FT /codon_start=1
FT /product="putative movement protein 1"
FT /db_xref="GOA:F1BA31"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:F1BA31"
FT /protein_id="ADY69094.1"
FT /translation="MSTVDKPIIEVGLPQTNIVEDTATKRGRTKNGRAVALKGIDSHST
FT GSAIGGITIVAETVSVVNHFNF"
FT CDS 2412. .2651
FT /codon_start=1
FT /product="putative movement protein 2"
FT /db_xref="UniProtKB/TrEMBL:F1BA32"
FT /protein_id="ADY69095.1"
FT /translation="MSHSRGLIHTLLVLLLVVSLLWLKQYRWSITLTFDSSLNRVIALA
FT LLGAVLTSVGNSSTVYYINNSTNENKTNHIKIET"
FT CDS 2648. .3688
FT /codon_start=1
FT /product="putative coat protein"
FT /db_xref="GOA:F1BA33"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:F1BA33"
FT /protein_id="ADY69096.1"
FT /translation="MNGISQNDPKVVKAAEAGIPWAIKLRSRGWRSLRTNQKLAARAFV
FT GSSAPSVAIVPRVTRLVRGNPQRTRRNPQQPGNAADSTTITKSDFVADVIGNTTEAGTV
FT TSWLINPSNVVAFPSLLNESARWEKYKITKFSIRFSSKCSEYTDGGVVVQFASDSTDAV
FT PTSKYGIMQSQCRADASAHGSVLLNCAVDPKVRFVRDSSADSGKVVDYGRVNLCAYGQK
FT AADPSIIGELFFEYTIVFSEARVNRGVTQYQYLLTDSVDGPSFASVTSTSAELTFTFNL
FT PGKYTFICSFTGTVSGLYAADLTYNWSVDNTTAVAGVVTVTSPGATLSWAIGATVTSLL
FT WQCNIF"
XX
SQ Sequence 3929 BP; 1040 A; 884 C; 1019 G; 986 T; 0 other;
hm640935 Length: 3929 07-SEP-2011 Type: N Check: 976 ..
1 ggtatctgtt tgccgacaat accacgatgt ttcgcgattt gtgccgatac
51 gctagtcaga tagtggttgg tagcacagtg ctggctgtga atgttagtgt
101 tttgtccgta gctgtacaac ttcggggtgc agtggcggtc tatgaagtgg
151 ccagtaaatg tgtgacagcg ctggaagact gcgtttccga tcttcgtgat
201 tcgctgaagc cagttcccga cgagctgtac aatccttcct tgtgtgcggc
251 tctgcgtatg aataacactg acacagaact aacagctgaa gaccttttaa
301 ccacagacag agttttggtc aacacttggg aaaccgatga ggccaaattc
351 aaatataggt acaaggcgag aatacagagc gggcagcgtg ggaggtttat
401 gtatgagctt gtagcatatg gcaagaacca cttcgggcgg gcgccgagat
451 gttgcgatag caactatctt agtgtcactc gattgctggt aaaccgatgc
501 aatgagctac acttgacccc cactcaaacg cgcaacgttg tagctgaggc
551 ggtgtcttta gttttcattc ctgatgagga agaaatccgc cagaccatgc
601 taacaaattc acattatgct tacatgcaac gcacccggca gagcgttgta
651 tccaccgtcg aaccgtggtg gaaagagctg ttgcttggtc cgtctaacgc
701 taaaaattgg cgacgagctt ggatcgaaat ctgtggattg cctgaaaaac
751 aggcgatctc cttcgctaaa taggggtgcc tctggcgcac acggggtgta
801 actactaaca tatttagggc acaccacccc gatgtcactg agtgccacga
851 ggctaatgtt cacgttaggg atacttacct gtacggcgca cgattgacga
901 atggcctgaa gattggggtg catcgcaatg attttcccaa ccttcggcga
951 ggcgtcatgg agcgcgtgta ctatgtagaa aacagtgaaa caaaacaatt
1001 gcagagccct ataacacccg tcgatggtat ttatcggagc atgaaataca
1051 tccgtctaaa actcggagga tacatcggtc ttcattcccg gacacccatg
1101 cagaaatgtg tggatatgta caagggcagg aagcggcgta cttaccaaag
1151 agcaatggat gaatgtaaac ttgaaccgtt caatcctcga tgggcgcacg
1201 ttaagaactt tcttaaacgt gagaaattga acttatctgc aaaacctgac
1251 ccggcagcaa gaattatcag tcctagagat cctaggtaca acatacactt
1301 ggcgtgttac cttaaacctt ttgagcatca tctgtaccgc gccatagaca
1351 atctctgggg ccaacctacg gtaatgaaag gctacacagt tgaagaggtt
1401 gggcaactat ttcatcgatc gtggagtgca ttccgcaaac ctgttgcagt
1451 cggattcgat atgaaacggt tcgaccaaca cgtaagcgtt gccgctttgc
1501 agtttgagca cgctgtatac ttacaggctt ttggttacga tgctcacttg
1551 caaagaatgc tatcactgca gcttaacaat atgtgcaatg catattgtaa
1601 gaatggcaaa ctgagatata ataaaatggg aacccgaatg agtggcgatc
1651 tgaatacgag ttgcggaaac gtgttgttag cttgtgctat cacttacgac
1701 atttgcaagc gcattgggct gaaagcacat ctacttaaca atggggatga
1751 ttgtgttcta atactagaaa gcgaagacct gcctcgtgtc gagatccttg
1801 atacattgtg ggctgaatac ggattcgtgt gtatagtgga gaaaccagtc
1851 ttcgaaattg aagagataga attttgccag atgcaccctg tatttgcgaa
1901 tagtgggtac gtgatggtgc gcaatcctca tgtgagcatc gccaaggacc
1951 aacactcgct aatcccatgg actaatgtca aagttgccaa acagtgcttg
2001 aaagctatag gtgaatgtgg tagtagtctc acgagcggca tcccgatggt
2051 ccatgcattt taccaatgct tgctgcgtaa tactagcgac gtgcgtatta
2101 atccaaatct acgtgaggct agtgcagcgg catattttgg gatgggagga
2151 cgaacccggg gcacacacag catcagtgaa cggacccgat acagcttcta
2201 tctggcgttt ggaatcaccc ctgatgaaca acgcgcattt gaagacgatt
2251 gggaaaggga aactattgtc tgggagtggg cccccgacgg atttgttgcc
2301 gcaaaccacg catgtctaca gttgataagc caatcataga agtaggtcta
2351 ccgcaaacta acatagtaga agacacagca accaagcgag gtaggacaaa
2401 gaacggacga gctgtcgcac tcaaggggat tgattcacac tctactggtt
2451 ctgctattgg tggtatcact attgtggctg aaacagtatc ggtggtcaat
2501 cactttaact tttgattctt cactcaaccg tgtaattgct ctagccctct
2551 tgggcgctgt attaactagc gtaggtaatt ctagcaccgt atattacatt
2601 aataatagta ccaacgagaa caagacaaac cacatcaaaa ttgagacatg
2651 aacggcattt cacaaaatga tcctaaagtt gttaaggctg cagaagctgg
2701 aataccgtgg gctattaaac tgcgttctcg cggttggcgt agtctgcgta
2751 ctaaccagaa gcttgcagct cgcgcttttg tggggtctag tgctccgagt
2801 gttgctattg tcccacgagt tactcgactc gttcgaggta acccgcaaag
2851 gactcgtcgc aatcctcaac aaccaggcaa cgctgctgac agtactacga
2901 tcacaaaatc agattttgtc gcagacgtta tcggcaatac aacagaggca
2951 ggaaccgtca cctcatggct gatcaatcca tcaaacgtgg tggcgtttcc
3001 ttcattactc aatgagagtg cccgctggga aaagtacaag atcacgaagt
3051 tcagcattag attcagttcg aaatgcagcg aatacaccga tggaggtgtg
3101 gttgtccagt tcgcgtcgga tagtacagac gccgttccaa cgagcaagta
3151 cggcattatg cagtcgcagt gtcgagcaga tgcaagcgcc cacggctcag
3201 tgctccttaa ctgtgctgtt gatccgaagg tgcggtttgt gcgagactct
3251 agtgcggata gtgggaaagt cgttgactac ggtcgcgtca atctttgtgc
3301 gtatggtcag aaagcagcgg atccttctat tataggtgag ctgttctttg
3351 agtacaccat cgtgtttagt gaggcgcggg tgaatcgcgg cgtcactcaa
3401 tatcagtact tgctgactga cagtgtcgac gggccgtcgt ttgcgagcgt
3451 cacgagcacg tctgctgagc tgacatttac atttaatctg cctggcaaat
3501 acacgttcat atgttctttc accggaacag tgagcgggtt gtatgctgca
3551 gatctaacgt ataactggag cgtagataac accactgcag tggctggtgt
3601 cgtaacggta acatcgcctg gcgcaacact tagttgggcc attggagcaa
3651 ctgttacgag cctgttgtgg cagtgtaaca tcttttagag tagactattc
3701 gggtagagaa cgcgttgaga catggttaaa gggccccggc aagggtaatg
3751 gcatcgctgg cgcgttcatg ggtatcccca ctggtggtgg gcgtgtataa
3801 actctctgat ctccaggaca cgctggagaa cgtacctgca taaaatcttg
3851 gagctggacc aagtgggctt gttaggtact ccctagactt tgtcttaaag
3901 ggaaccgtgt gactcggttc tccttgccc