Sequence of DPV Severe fever with thrombocytopenia syndrome virus
Phlebovirus HB29/China/2010 strain HB29 segment L, complete sequence.
ACC No: HM745930
Dated: 2011-08-10 | Length: 6368 | CRC: 692042264
ID HM745930; SV 1; linear; viral cRNA; STD; VRL; 6368 BP.
XX
AC HM745930;
XX
DT 09-MAR-2011 (Rel. 108, Created)
DT 10-AUG-2011 (Rel. 109, Last updated, Version 2)
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DE Phlebovirus HB29/China/2010 strain HB29 segment L, complete sequence.
XX
KW .
XX
OS SFTS virus HB29
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RP 1-6368
RX DOI; 10.1056/NEJMoa1010095.
RX PUBMED; 21410387.
RA Yu X.J., Liang M.F., Zhang S.Y., Liu Y., Li J.D., Sun Y.L., Zhang L.,
RA Zhang Q.F., Popov V.L., Li C., Qu J., Li Q., Zhang Y.P., Hai R., Wu W.,
RA Wang Q., Zhan F.X., Wang X.J., Kan B., Wang S.W., Wan K.L., Jing H.Q.,
RA Lu J.X., Yin W.W., Zhou H., Guan X.H., Liu J.F., Bi Z.Q., Liu G.H., Ren J.,
RA Wang H., Zhao Z., Song J.D., He J.R., Wan T., Zhang J.S., Fu X.P.,
RA Sun L.N., Dong X.P., Feng Z.J., Yang W.Z., Hong T., Zhang Y., Walker D.H.,
RA Wang Y., Li D.X.;
RT "Fever with thrombocytopenia associated with a novel bunyavirus in China";
RL N. Engl. J. Med. 364(16):1523-1532(2011).
XX
RN [2]
RP 1-6368
RA Li J., Sun Y., Zhang Q., Lu J., Liang M., Li C., Li D.;
RT "A novel Phlebovirus related to severe fever with thrombocytopenia syndrome
RT (SFTS) in humans";
RL Unpublished.
XX
RN [3]
RP 1-6368
RA Li J., Sun Y., Zhang Q., Lu J., Liang M., Li C., Li D.;
RT ;
RL Submitted (10-JUL-2010) to the INSDC.
RL Department of Viral Hemorrhagic Fever, National Institute for Viral
RL Diseases Control and Prevention, Changbai Road 155, Beijing 102206, China
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CC GenBank Accession Numbers HM745930-HM745932 represent sequences
CC from the 3 segments of Phlebovirus HB29/China/2010.
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FH Key Location/Qualifiers
FH
FT source 1. .6368
FT /organism="SFTS virus HB29"
FT /segment="L"
FT /host="Homo sapiens"
FT /strain="HB29"
FT /mol_type="viral cRNA"
FT /country="China"
FT /isolation_source="serum"
FT /collection_date="18-May-2010"
FT /db_xref="taxon:992212"
FT CDS 17. .6271
FT /codon_start=1
FT /product="RNA polymerase"
FT /db_xref="GOA:F1BA46"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="InterPro:IPR007322"
FT /db_xref="InterPro:IPR022531"
FT /db_xref="UniProtKB/TrEMBL:F1BA46"
FT /protein_id="ADZ04470.1"
FT /translation="MNLEVLCGRINVENGLSLGEPGLYDQIYDRPGLPDLDVTVDATGV
FT TVDIGAVPDSASQLGSSINAGLITIQLSEAYKINHDFTFSGLSKTTDRRLSEVFPITHD
FT GSDGMTPDVIHTRLDGTIVVVEFSTTRSHNIGGLEAAYRTKIEKYRDPISRRVDIMENP
FT RVFFGVIVVSSGGVLSNMPLTQDEAEELMYRFCIANEIYTKARSMDADIELQKSEEELE
FT AISRALSFFSLFEPNIERVEGTFPNSEIEMLEQFLSTPADVDFITKTLKAKEVEAYADL
FT CDSHYLKPEKTIQERLEINRCEAIDKTQDLLAGLHARSNKQTSLNRGTVKLPPWLPKPS
FT SESIDIKTDSGFGSLMDHGAYGELWAKCLLDVSLGNVEGVVSDPAKELDIAISDDPEKD
FT TPKEAKITYRRFKPALSSSARQEFSLQGVEGKKWKRMAANQKKEKESHETLSPFLDVED
FT IGDFLTFNNLLADSRYGDESVQRAVSILLEKASAMQDTELTHALNDSFKRNLSSNVVQW
FT SLWVSCLAQELASALKQHCRAGEFIIKKLKFWPIYVIIKPTKSSSHIFFSLGIRKADVT
FT RRLTGRVFSDTIDAGEWELTEFKSLKTCKLTNLVNLPCTMLNSIAFWREKLGVAPWLVR
FT KPCSELREQVGLTFLVSLEDKSKTEEIITLTRYTQMEGFVSPPMLPKPQKMLGKLDGPL
FT RTKLQVYLLRKHLDCMVRIASQPFNLIPREGRVEWGGTFHAISGRSTNLENMVNSWYIG
FT YYKNKEESTELNALGEMYKKIVEMEEDKPSSPEFLGWGDTDSPKKHEFSRSFLRAACSS
FT LEREIAQRHGRQWKQNLEERVLKEIGTKNILDLASMKATSNFSKDWELYSEVQTKEYHR
FT SKLLEKMATLIEKGVMWYIDAVGQAWKAVLDDGCMRICLFKKNQHGGLREIYVMDANAR
FT LVQFGVETMARCVCELSPHETVANPRLKNSIIENHGLKSARSLGPGSININSSNDAKKW
FT NQGHYTTKLALVLCWFMPAKFHRFIWAAISMFRRKKMMVDLRFLAHLSTKSESRSSDPF
FT REAMTDAFHGNREVSWMDKGRTYIKTETGMMQGILHFTSSLLHSCVQSFYKSYFVSKLK
FT EGYMGESISGVVDVIEGSDDSAIMISIRPKSDMDEVRSRFFVANLLHSVKFLNPLFGIY
FT SSEKSTVNTVYCVEYNSEFHFHRHLVRPTLRWIAASHQISETEALASRQEDYSNLLTQC
FT LEGGASFSLTYLIQCAQLLHHYMLLGLCLHPLFGTFMGMLISDPDPALGFFLMDNPAFA
FT GGAGFRFNLWRACKTTDLGRKYAYYFNEIQGKTKGDEDYRALDATSGGTLSHSVMVYWG
FT DRKKYQALLNRMGLPEDWVEQIDENPGVLYRRAANKKELLLKLAEKVHSPGVTSSLSKG
FT HVVPRVVAAGVYLLSRHCFRFSSSIHGRGSAQKASLIKLLMMSSVSAMKHGGSLNPNQE
FT RMLFPQAQEYDRVCTLLEEVEHLTGKFVVRERNIVRSRIDLFQEPVDLRCKAEDLVSEV
FT WFGLKRTKLGPRLLKEEWDKLRASFAWLSTDPSETLRDGPFLSHVQFRNFIAHVDAKSR
FT SVRLLGAPVKKSGGVTTISQVVRMNFFPGFSLEAEKSLDNQERLESISILKHVLFMVLN
FT GPYTEEYKLEMIIEAFSTLVIPQPSEVIRKSRTMTLCLLSNYLSSKGGSILDQIERAQS
FT GTLGGFSKPQKTFIRPGGGVGYKGKGVWTGVMEDTHVQILIDGDGTSNWLEEIRLSSDA
FT RLYDVIESIRRLCDDLGINNRVASAYRGHCMVRLSGFKIKPASRTDGCPVRIMERGFRI
FT RELQNPDEVKMRVRGDILNLSVTIQEGRVMNILSYRPRDTDISESAAAYLWSNRDLFSF
FT GKKEPSCSWICLKTLDNWAWSHASVLLANDRKTQGIDNRAMGNIFRDCLEGSLRKQGLM
FT RSKLTEMVEKNVVPLTTQELVDILEEDIDFSDVIAVELSEGSLDIESIFDGAPILWSAE
FT VEEFGEGVVAVSYSSKYYHLTLMDQAAITMCAIMGKEGCRGLLTEKRCMAAIREQVRPF
FT LIFLQIPEDSISWVSDQFCDSRGLDEESTIMWG"
XX
SQ Sequence 6368 BP; 1760 A; 1384 C; 1697 G; 1527 T; 0 other;
hm745930 Length: 6368 10-AUG-2011 Type: N Check: 5986 ..
1 acacagagac gcccagatga acttggaagt gctttgtggt aggataaacg
51 tggagaatgg gctgtctctt ggagaaccag gcctgtacga ccaaatctac
101 gataggccag ggcttccaga cctagatgtg actgtcgatg ccactggtgt
151 tacagtggac ataggggctg tgccagactc agcatcacaa ttgggctcat
201 caatcaacgc tgggttgatc acaatccagc tctcagaggc atataagatc
251 aatcatgact tcacgttttc tggcctgtca aagacaacag accgacgcct
301 ctcagaggta ttccccatta cccatgatgg ttctgatggg atgacccctg
351 atgtgattca cacaagattg gatggaacca ttgtggtggt tgaattttca
401 accactagga gccataacat tgggggcctg gaggcagcat ataggacaaa
451 gatagaaaaa tatagggacc caatctcaag acgtgttgat atcatggaga
501 acccgagggt cttctttggc gtaattgtag tctcgtcagg aggggttctg
551 tccaacatgc ccctgactca ggatgaggca gaggagctca tgtacaggtt
601 ctgcatagcc aatgagatct acactaaggc tagatctatg gatgcagaca
651 ttgagctaca gaagagtgaa gaagagcttg aggctattag tagggcacta
701 tcattcttca gtctgtttga gcctaacatt gaaagagtgg agggaacatt
751 ccccaattct gaaatcgaga tgctggaaca gtttctctca acaccagctg
801 atgttgactt catcaccaag accctcaaag caaaagaggt agaggcctat
851 gctgatcttt gcgacagtca ctacctaaag cctgagaaaa ctattcagga
901 gcggctagag atcaatagat gtgaggctat agacaaaact caggacctac
951 tagctggcct gcatgcgagg agcaacaagc aaacatcatt gaatcgaggg
1001 acagtcaaac tcccaccctg gctaccaaag ccatcaagtg aatcaataga
1051 catcaagacc gactcaggct ttggttcttt gatggatcat ggcgcatatg
1101 gtgagctgtg ggcaaagtgc cttctagatg tctcactggg caatgtggag
1151 ggggtagtca gtgaccctgc aaaagagctt gacattgcta tctctgatga
1201 tccagaaaaa gataccccca aagaggcaaa gataacctat aggcgattca
1251 agcctgcctt aagttcaagt gcccgtcaag aattttctct ccaaggagtg
1301 gaggggaaga aatggaagag aatggcagca aaccagaaga aagagaagga
1351 gtcccatgag acattgagcc ctttcttgga tgttgaagac attggagatt
1401 tcctaacatt caacaatctt cttgctgatt cgaggtatgg agatgagtcc
1451 gtccaaagag ctgtgtcaat cttgttggaa aaggcatctg ccatgcaaga
1501 cacagagctt actcatgccc tcaatgactc atttaagagg aacctaagca
1551 gtaatgtggt ccagtggtct ctttgggtct cctgcttagc acaggagcta
1601 gctagtgccc tgaagcagca ctgcagggct ggtgagttca tcatcaagaa
1651 gctgaagttc tggcctatct atgtcattat caagccgacc aaatcatcat
1701 cccatatctt cttcagcttg gggatccgca aggctgacgt gacaaggagg
1751 ctaactggca gggtcttctc tgacaccatt gatgctgggg aatgggagct
1801 aacagagttc aaaagcctaa agacatgcaa gctcacaaat cttgtcaacc
1851 tgccatgcac catgctgaac tcaatagctt tctggagaga gaagttgggc
1901 gtggccccat ggctggttcg aaagccttgt tcagagctca gagagcaggt
1951 gggcctgacc ttcctggtca gtctggagga caagtccaag actgaggaga
2001 tcatcacctt gacaaggtac acccagatgg agggctttgt ctccccccct
2051 atgctgccta agccccaaaa gatgctaggg aaactggatg gacctttgag
2101 aactaagcta caggtatacc tcctcaggaa acatctggat tgcatggtgc
2151 gaattgcttc tcagccattc aacttaatcc ctagggaggg gagggtagag
2201 tggggaggaa cattccatgc catctcaggc cggtccacaa accttgagaa
2251 tatggtgaac agctggtaca ttgggtacta caagaacaaa gaggagtcaa
2301 cagagctaaa tgccctcgga gaaatgtaca agaagattgt ggagatggaa
2351 gaggacaagc ccagtagccc tgagtttcta gggtggggag acacagactc
2401 ccctaagaag catgaattct cacggagctt cctcagagct gcttgctcat
2451 ctctggagag agaaattgct cagcggcatg gaagacaatg gaagcagaac
2501 cttgaggagc gtgtcctgaa agagattggg accaagaaca tcctggacct
2551 tgcatccatg aaagctacaa gcaacttttc caaagattgg gagctctact
2601 cagaagtcca gaccaaagag taccataggt ccaaactgct ggagaagatg
2651 gccacattga ttgagaaggg ggttatgtgg tacattgatg ctgtgggcca
2701 ggcatggaag gcagttctgg atgacgggtg catgcgaatc tgtctcttca
2751 aaaagaatca gcatggtggc ctcagagaga tctacgttat ggatgctaat
2801 gcccggcttg tgcagtttgg ggtcgagacc atggccaggt gtgtctgtga
2851 gctaagccca catgagactg ttgccaaccc taggctcaag aattctatca
2901 tagagaacca tgggctgaag tcagcccgca gtcttggccc tggctctatt
2951 aacataaact catccaatga tgccaagaag tggaatcagg ggcactacac
3001 aacaaagcta gctctagttc tttgttggtt catgccagcc aaattccaca
3051 gattcatttg ggctgccatt tccatgtttc ggagaaaaaa gatgatggtg
3101 gacctaaggt ttttggctca cctcagtact aaatctgagt ctaggtcatc
3151 tgatccgttc agggaagcaa tgacagacgc cttccatggt aatagggaag
3201 tttcatggat ggacaaaggg cgaacttaca taaagacaga gacaggaatg
3251 atgcagggca tactgcactt tacatctagc ctcctccact cttgtgttca
3301 gagcttctac aagtcctatt tcgtctcgaa gctcaaggag ggctacatgg
3351 gggaaagcat cagtggggtg gtggatgtca tagaaggctc tgacgactca
3401 gcgatcatga tcagcatacg ccccaagtca gacatggatg aagtccgatc
3451 aaggttcttt gttgctaact tgctccactc tgtcaagttc ttgaaccctt
3501 tgtttgggat ttattcttca gagaaatcaa cagtgaacac agtgtattgt
3551 gtcgagtata actctgaatt ccatttccac aggcacttgg ttagacccac
3601 actgagatgg atagcagcgt ctcaccaaat ctcagagaca gaagcccttg
3651 caagcaggca agaagattac tccaaccttc taacgcagtg cttggaagga
3701 ggggcctcat tctctcttac ctacctcata cagtgcgctc agctcctgca
3751 ccactacatg cttctaggac tatgcttaca tcccttattt ggaaccttca
3801 tggggatgtt gatatcagac ccagatccag ccctagggtt cttcctcatg
3851 gacaaccctg cattcgcagg gggtgcagga tttagattca atctgtggag
3901 agcctgcaag actacagacc ttggacggaa gtatgcttat tattttaatg
3951 agatacaggg taaaacaaag ggagatgagg actacagagc tctggatgcc
4001 acatcgggag gaactctcag ccactctgtt atggtgtatt ggggggacag
4051 gaagaagtat caggctttgt tgaacaggat gggccttcct gaggactggg
4101 tagagcagat agatgagaat cctggagtcc tttacaggag agctgccaac
4151 aagaaggaac tactcttaaa actggcagag aaggttcatt ctcctggtgt
4201 aactagcagc ctgagtaagg ggcatgtggt gcctcgggtg gtggcagcag
4251 gagtatacct tctctcacgc cactgctttc gctttagctc aagcattcat
4301 ggcaggggct cagcacagaa ggctagcctt ataaaactgc taatgatgtc
4351 ttctgtttct gccatgaagc acgggggctc actaaaccct aatcaggagc
4401 gaatgctctt ccctcaggct caagagtatg acagagtatg cacattgctt
4451 gaggaagttg aacacctaac agggaaattt gttgttaggg agagaaacat
4501 tgtcaggagc cgcatagact tgttccaaga accagtggac ttgcggtgca
4551 aggcagagga tctggtgtca gaggtgtggt ttggcctgaa aaggactaag
4601 cttggacccc gtctcctcaa ggaagagtgg gacaaactta gggcttcatt
4651 tgcatggctg agcacagacc catctgaaac actgagggat ggtccttttc
4701 ttagccatgt gcagtttagg aacttcatag cccacgttga tgccaaatca
4751 agatcagtca ggctcctggg tgcccccgtg aagaagtcag gtggggtcac
4801 caccataagc caagtagtta gaatgaactt cttccctggt tttagcctag
4851 aagctgagaa gagcttagat aatcaggaaa gacttgagag catctccatc
4901 ctcaagcatg tcttgttcat ggtcttgaat ggcccataca ctgaggagta
4951 caagctggag atgatcatag aggccttctc tactcttgtg ataccacagc
5001 catcagaggt catcaggaaa tctaggacca tgaccttatg cctcttatcg
5051 aattacttgt ctagtaaggg tgggtccatt ctagaccaga ttgagagggc
5101 acagtcagga actctaggag gctttagcaa gccccagaag acattcatta
5151 ggccaggagg tggtgttggc tataagggaa aaggtgtgtg gactggggtg
5201 atggaggaca cccatgttca aattctgata gatggagatg ggactagtaa
5251 ctggcttgag gagatcaggc tcagtagtga tgccaggctt tatgatgtca
5301 ttgaatccat ccgaaggtta tgtgatgacc ttgggatcaa caacagggtg
5351 gcatctgcat atagaggtca ttgcatggtt aggctgagtg gattcaagat
5401 caagccagca tcaaggactg acgggtgtcc agtcaggatc atggaaaggg
5451 gcttcaggat tagggaactt caaaatccgg atgaggtcaa gatgagagtg
5501 aggggcgaca tcctcaacct ctctgtcaca atacaagaag gaagggtcat
5551 gaacattctg agctacaggc caagagacac tgatatatca gagtcagctg
5601 cagcatacct ctggagtaat cgagacctct tctcctttgg gaagaaggaa
5651 ccatcctgca gctggatctg cttaaaaact cttgacaatt gggcctggtc
5701 acatgcctca gttctcctgg caaatgatag gaagacccaa ggcattgaca
5751 atagagctat ggggaacatt ttcagggact gtcttgaagg ttctcttaga
5801 aagcaagggc tgatgaggtc aaagctcaca gagatggtgg agaagaatgt
5851 agttccttta acaactcaag agctcgtcga catcctggag gaggacattg
5901 acttttcaga tgtcatagct gtggagctct cagaggggtc gcttgacatt
5951 gaatccatct ttgatggggc acctatcttg tggtctgctg aggtggaaga
6001 gtttggagaa ggagtggtgg ctgtgagcta ttccagtaag tactatcatc
6051 taaccctgat ggaccaagct gccatcacaa tgtgtgcgat catgggtaag
6101 gaaggctgta gagggcttct taccgagaag agatgcatgg cagccatacg
6151 agagcaggta cggccattcc tcatattcct gcaaatacct gaggacagca
6201 tttcttgggt gtctgatcag ttctgcgact ccaggggcct tgatgaagag
6251 agcaccatta tgtggggtta actttgaaac acggttggaa cgcagttgat
6301 gtgtctgtgg gtggctaggg agtgttggtt ttagaaggat ttccttaaga
6351 tctgggcggt ctttgtgt