Sequence of DPV Severe fever with thrombocytopenia syndrome virus
Phlebovirus HB29/China/2010 strain HB29 segment S, complete sequence.
ACC No: HM745932
Dated: 2011-10-14 | Length: 1744 | CRC: 554762428
ID HM745932; SV 1; linear; genomic RNA; STD; VRL; 1744 BP.
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AC HM745932;
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DT 09-MAR-2011 (Rel. 108, Created)
DT 14-OCT-2011 (Rel. 110, Last updated, Version 3)
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DE Phlebovirus HB29/China/2010 strain HB29 segment S, complete sequence.
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KW .
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OS SFTS virus HB29
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
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RN [1]
RP 1-1744
RX DOI; 10.1056/NEJMoa1010095.
RX PUBMED; 21410387.
RA Yu X.J., Liang M.F., Zhang S.Y., Liu Y., Li J.D., Sun Y.L., Zhang L.,
RA Zhang Q.F., Popov V.L., Li C., Qu J., Li Q., Zhang Y.P., Hai R., Wu W.,
RA Wang Q., Zhan F.X., Wang X.J., Kan B., Wang S.W., Wan K.L., Jing H.Q.,
RA Lu J.X., Yin W.W., Zhou H., Guan X.H., Liu J.F., Bi Z.Q., Liu G.H., Ren J.,
RA Wang H., Zhao Z., Song J.D., He J.R., Wan T., Zhang J.S., Fu X.P.,
RA Sun L.N., Dong X.P., Feng Z.J., Yang W.Z., Hong T., Zhang Y., Walker D.H.,
RA Wang Y., Li D.X.;
RT "Fever with thrombocytopenia associated with a novel bunyavirus in China";
RL N. Engl. J. Med. 364(16):1523-1532(2011).
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RN [2]
RP 1-1744
RA Li J.D., Liang M.F., Sun Y.L., Zhang Q.F., Li C., Lu J., Qu J., Zhan F.X.,
RA Guan X.H., Li D.X.;
RT "A novel Phlebovirus related to severe fever with thrombocytopenia syndrome
RT (SFTS) in humans";
RL Unpublished.
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RN [3]
RP 1-1744
RA Li J.D., Liang M.F., Sun Y.L., Zhang Q.F., Li C., Lu J., Qu J., Zhan F.X.,
RA Guan X.H., Li D.X.;
RT ;
RL Submitted (11-JUL-2010) to the INSDC.
RL Department of Viral Hemorrhagic Fever, National Institute for Viral
RL Diseases Control and Prevention, Changbai Road 155, Beijing 102206, China
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CC GenBank Accession Numbers HM745930-HM745932 represent sequences
CC from the 3 segments of Phlebovirus HB29/China/2010.
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FH Key Location/Qualifiers
FH
FT source 1. .1744
FT /organism="SFTS virus HB29"
FT /segment="S"
FT /host="Homo sapiens"
FT /strain="HB29"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="serum"
FT /collection_date="20-May-2010"
FT /db_xref="taxon:992212"
FT CDS 43. .780
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /db_xref="GOA:F1BA48"
FT /db_xref="InterPro:IPR009522"
FT /db_xref="UniProtKB/TrEMBL:F1BA48"
FT /protein_id="ADZ04472.1"
FT /translation="MSEWSRIAVEFGEQQLNLTELEDFARELAYEGLDPALIIKKLKET
FT GGDDWVKDTKFIIVFALTRGNKIVKASGKMSNSGSKRLMALQEKYGLVERAETRLSITP
FT VRVAQSLPTWTCAAAAALKEYLPVGPAVMNLKVENYPPEMMCMAFGSLIPTAGVSEATT
FT KTLMEAYSLWQDAFTKTINVKMRGASKTEVYNSFRDPLHAAVNSVFFPNDVRVKWLKAK
FT GILGPDGVPSRAAEVAAAAYRNL"
FT CDS complement(835. .1716)
FT /codon_start=1
FT /product="nonstructural protein"
FT /db_xref="UniProtKB/TrEMBL:F1BA49"
FT /protein_id="ADZ04473.1"
FT /translation="MSLSKCSNVDLKSVAMNANTVRLEPSLGEYPTLRRDLVECSCSVL
FT TLSMVKRMGKMTNTVWLFGNPKNPLHQLEPGLEQLLDMYYKDMRCYSQRELSALRWPSG
FT KPSVWFLQAAHMFFSIKNSWAMETGRENWRGLFHRITKGQKYLFEGDMILDSLEAIEKR
FT RLRLGLPEILITGLSPILDVALLQIESLARLRGLSLNHHLFTSPSLRKPLLDCWDFFIP
FT VRKKKTDGSYSVLDEDDEPGVLHGYPHLMAHYLNRCPFHNLIRFDEELRTAALNTIWGR
FT DWPAIGDLPKEV"
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SQ Sequence 1744 BP; 456 A; 413 C; 448 G; 427 T; 0 other;
hm745932 Length: 1744 14-OCT-2011 Type: N Check: 5630 ..
1 acacaaagac ccccaaaaaa ggaaagacgc aaaggagtga tcatgtcgga
51 gtggtccagg attgcagtgg agtttggtga gcagcagctc aatttgactg
101 agcttgagga cttcgcgaga gagctggcct atgaaggcct tgaccctgct
151 ttgatcatca agaagctgaa ggagacaggt ggagatgatt gggtgaagga
201 tacaaagttc atcattgtct ttgccctgac tcgaggcaat aagatcgtca
251 aggcatcagg gaaaatgtca aactcagggt ccaagaggtt gatggcactc
301 caagagaaat atggactggt tgagagggca gagaccaggc tctcaatcac
351 tccagtgagg gttgcgcaga gccttcccac ttggacatgt gctgctgcag
401 cagctctaaa ggagtatctc ccagtagggc cagccgtcat gaacctgaag
451 gttgagaatt atccccctga gatgatgtgc atggcctttg gatccctgat
501 tccaactgcg ggggtatctg aagccacaac caagaccctg atggaggcct
551 actctctgtg gcaagatgcc ttcaccaaga ctatcaatgt aaagatgcgc
601 ggagccagca agacagaagt ttacaactcc ttcagggacc ctcttcatgc
651 tgctgtgaac tctgtcttct ttcccaatga tgttcgggta aagtggctga
701 aggccaaggg gatccttggc ccagatgggg tccccagcag agctgctgag
751 gttgctgctg ctgcttacag aaacctgtaa gcagcaattt gacatatcca
801 attaggctaa aattcatgat ccaattcgac aaaattagac ctccttcggg
851 aggtcaccaa tggctggcca atctcttccc cagatggtgt tcagggctgc
901 agttctcagc tcttcatcaa acctgatgag gttgtggaaa gggcacctat
951 ttaaatagtg tgccatcaga tgtgggtaac catgaaggac tccaggctca
1001 tcatcctcat ccaagacact gtaagagcca tctgtcttct ttttgcggac
1051 aggaataaag aagtcccaac agtccaatag aggcttacgc aatgagggag
1101 aagtgaataa gtggtggttc aagctcaggc ctcttagcct tgcaagtgac
1151 tctatctgga ggagggccac atccagaatt ggggatagtc cagttattag
1201 gatctcaggt aacccaagtc taagcctccg cttctcaatg gcttcaagag
1251 aatctaatat catgtcccct tcaaaaaggt acttctggcc ttttgtaatc
1301 ctgtggaaga ggccccgcca gttctctctt ccggtttcca ttgcccagct
1351 gttcttgatg gagaagaaca tgtgagctgc ctgtaggaac catacagatg
1401 gttttccact aggccacctg agagcactca gctctctctg ggagtagcac
1451 ctcatgtcct tgtagtacat gtccaacaac tgctcaagtc cgggctcaag
1501 ctggtgaaga ggattttttg ggttgccaaa taaccaaaca gtgttggtca
1551 tcttacccat cctcttgacc attgacagag tcaacacact acaagagcac
1601 tcaacgaggt ctctcctgag agtggggtac tctcctagag atggctcaag
1651 cctgacagtg ttggcattca ttgctacaga tttgaggtca acgttggagc
1701 atttgctcag cgacatggtt tccaaatgaa gggggtcttt gtgt