Sequence of DPV Papaya ringspot virus

Papaya ringspot virus strain Ellampillai coat protein gene, partial cds.

ACC No: HM754218

Dated: 2010-10-28 | Length: 858 | CRC: -1837017096

                
ID   HM754218; SV 1; linear; genomic RNA; STD; VRL; 858 BP.
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AC   HM754218;
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DT   28-OCT-2010 (Rel. 106, Created)
DT   28-OCT-2010 (Rel. 106, Last updated, Version 1)
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DE   Papaya ringspot virus strain Ellampillai coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-858
RA   Salma M., Kumar K.K., Angappan K., Balasubramanian P.;
RT   "Cloning of the PRSV genes from Tamil Nadu Isolates";
RL   Unpublished.
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RN   [2]
RP   1-858
RA   Salma M., Kumar K.K., Angappan K., Balasubramanian P.;
RT   ;
RL   Submitted (10-JUN-2010) to the EMBL/GenBank/DDBJ databases.
RL   Center For Plant Molecular Biology and Biotechnology, Department of
RL   Biotechnology, Tamil Nadu Agriculture University, Marudamalai Main Road,
RL   Coimbatore, Tamil Nadu 641 003, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /organism="Papaya ringspot virus"
FT                   /host="papaya"
FT                   /strain="Ellampillai"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Tamil Nadu"
FT                   /collection_date="Mar-2009"
FT                   /PCR_primers="fwd_seq: tccaaraatgaagctgtggatgt, rev_seq:
FT                   gttgcgcatacccaggagag"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>858
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ADO66660.1"
FT                   /translation="SKNEAVDVGLNDKLKEKEKEKDKGREKEKKDKKDAGDGGYVSTST
FT                   KTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKAVLNLNHLLQYNPQQIDISNTR
FT                   ATQSQFEKWYEGVRNDYGLSDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDY
FT                   PIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDF
FT                   YEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSL
FT                   LGMRN"
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SQ   Sequence 858 BP; 296 A; 146 C; 217 G; 199 T; 0 other;

hm754218 Length: 858  28-OCT-2010  Type: N  Check: 9539  ..

       1  tccaagaatg aagctgtgga tgtgggtctc aatgataagc tgaaggagaa
      51  agaaaaagaa aaagataaag ggagagaaaa agaaaagaaa gacaagaagg
     101  atgctggtga cggaggttat gtgtcaacta gcacaaaaac tggagagaga
     151  gatagagatg tcaatgctgg gactagtggt acattcacag ttccaagaat
     201  caagtcattt actgataaaa tgattttgcc cagaattaag gggaaagctg
     251  tccttaattt gaatcatctt cttcagtata atccacagca aattgacatc
     301  tcaaacactc gtgccacaca atcgcagttt gagaagtggt atgagggagt
     351  gaggaatgac tatggcctta gtgataatga aatgcaagta atgttgaatg
     401  gcttaatggt ttggtgtatc gaaaatggta catccccaga catatctggt
     451  gtctgggtta tgatggatgg tgagactcag gtcgattacc caattaaacc
     501  attaattgaa catgcaactc cttcatttag gcaaatcatg gctcacttca
     551  gtaacgcggc agaagcatat atcgcgaagc gaaatgcaac tgagagatac
     601  atgccgcggt atggaatcaa gagaaatttg actgacatta gcctcgctag
     651  atatgctttc gatttctatg aggtgaattc aaaaacacct gatagagctc
     701  gggaggctca tatgcagatg aaggcagctg cactgcggaa cacaaatcgc
     751  agaatgtttg gaatggacgg cagtgtcagt aacaaggaag aaaacacgga
     801  gagacacaca gtggaagatg tcaatagaga catgcactct ctcctgggta
     851  tgcgcaac