Sequence of DPV Zucchini yellow mosaic virus

Zucchini yellow mosaic virus isolate CF712 polyprotein mRNA, partial cds.

ACC No: HM768176

Dated: 2011-03-16 | Length: 849 | CRC: -1292671420

                
ID   HM768176; SV 1; linear; mRNA; STD; VRL; 849 BP.
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AC   HM768176;
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DT   31-OCT-2010 (Rel. 106, Created)
DT   16-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Zucchini yellow mosaic virus isolate CF712 polyprotein mRNA, partial cds.
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KW   .
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OS   Zucchini yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-849
RX   PUBMED; 21138748.
RA   Simmons H.E., Holmes E.C., Stephenson A.G.;
RT   "Rapid turnover of intra-host genetic diversity in Zucchini yellow mosaic
RT   virus";
RL   Virus Res. 155(2):389-396(2011).
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RN   [2]
RP   1-849
RA   Simmons H.E., Holmes E.C., Stephenson A.G.;
RT   ;
RL   Submitted (14-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL   Biology, The Pennsylvania State University, 208 Mueller Lab, University
RL   Park, PA 16801, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .849
FT                   /organism="Zucchini yellow mosaic virus"
FT                   /host="Cucurbita pepo var. texana"
FT                   /isolate="CF712"
FT                   /mol_type="mRNA"
FT                   /country="USA"
FT                   /collection_date="Aug-2007"
FT                   /db_xref="taxon:12232"
FT   CDS             <1. .849
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E3UZW9"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E3UZW9"
FT                   /protein_id="ADO95270.1"
FT                   /translation="MLQSGTQPTVSDAGATKKDKEDDKGKNKDVTGSGSGERTVAAVTK
FT                   DKDVNAGSHGKIVPRLSKITKKMSLPRVKGNVILDIDHLLEYKPDQIELYNTRASHQQF
FT                   ASWFNQVKMEYDLNEQQMGVVMNGFMVWCIENGTSPDINGVWVMMDGNEQVEYPLKPIV
FT                   ENAKPTLRQIMHHFSDAAEAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFDFYEVNSK
FT                   TPERAREAVAQMKAAALSNVSSRLFGLDGNVATTSEDTERHTARDVNRNMHTLLGVNTM
FT                   Q"
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SQ   Sequence 849 BP; 272 A; 160 C; 214 G; 203 T; 0 other;

hm768176 Length: 849  16-MAR-2011  Type: N  Check: 250  ..

       1  atgctccaat caggcactca gccaactgtg tcagatgctg gagctacaaa
      51  gaaagacaaa gaagatgaca aagggaaaaa caaggacgtt acaggctccg
     101  gctcaggcga gagaacagta gcagctgtca cgaaggacaa ggatgtgaat
     151  gctggttctc atgggaaaat tgtgccgcgt ctttcgaaga tcacaaagaa
     201  aatgtcattg ccacgcgtga aaggaaatgt gatactcgat attgatcatt
     251  tgctggaata taaaccggat caaattgagt tatataacac acgagcgtct
     301  catcagcagt tcgcctcttg gttcaaccag gttaagatgg aatatgattt
     351  gaacgagcaa cagatgggag ttgtaatgaa tggtttcatg gtttggtgta
     401  ttgaaaatgg cacttcaccc gacattaatg gagtgtgggt tatgatggac
     451  ggaaatgagc aagttgagta tcccttgaaa ccaatagttg aaaatgcaaa
     501  gccaacgctg cggcaaataa tgcatcattt ttcagatgca gcggaggcat
     551  atatagagat gagaaatgca gaggcaccat acatgccgag gtatggtttg
     601  cttcgaaacc tacgggatag gagtttagca cgatatgctt tcgatttcta
     651  tgaagtcaat tctaaaactc ctgaaagagc ccgcgaagct gttgcgcaga
     701  tgaaagcagc agctcttagc aatgtttctt caaggttgtt tggccttgat
     751  ggaaatgtcg ccaccactag cgaagacact gaacggcaca ctgcacgtga
     801  tgttaataga aacatgcaca ccttactagg tgtgaataca atgcagtaa