Sequence of DPV Iris yellow spot virus

Iris yellow spot virus isolate Rxn12 nucleocapsid protein (N) gene, complete cds.

ACC No: HM776015

Dated: 2010-11-30 | Length: 1086 | CRC: 886272491

                
ID   HM776015; SV 1; linear; viral cRNA; STD; VRL; 1086 BP.
XX
AC   HM776015;
XX
DT   30-NOV-2010 (Rel. 107, Created)
DT   30-NOV-2010 (Rel. 107, Last updated, Version 1)
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DE   Iris yellow spot virus isolate Rxn12 nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Iris yellow spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-1086
RA   Sether D.M., Borth W.B., Shimabuku R.S., Pappu H.R., Melzer M.J., Hu J.S.;
RT   "First report of Iris yellow spot virus in onion in Hawaii";
RL   Plant Dis. 94(12):1508-1508(2010).
XX
RN   [2]
RP   1-1086
RA   Sether D.M., Borth W.B., Shimabuku R.S., Pappu H.R., Melzer M.J., Hu J.S.;
RT   ;
RL   Submitted (16-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL   Plant and Environmental Protection Sciences, University of Hawaii, 3190
RL   Maile Way, Honolulu, HI 96822, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Iris yellow spot virus"
FT                   /host="Allium cepa 'Linda Vista' (bulb onion)"
FT                   /isolate="Rxn12"
FT                   /mol_type="viral cRNA"
FT                   /country="USA:Maui, Hawaii"
FT                   /collection_date="15-Jun-2010"
FT                   /db_xref="taxon:60456"
FT   gene            56. .877
FT                   /gene="N"
FT   CDS             56. .877
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="ADQ73944.1"
FT                   /translation="MSTARVKASEIEKLLSGGDADVVIESDEAEGFNFKNFVVANEGIR
FT                   MTFNNGYTILRNRAGIYKTIKSGKFTFQNKPIIIPSANVSPSQDDWTFRRLEGFIRARM
FT                   LVELIDTKNEKEKQKMYEKICGLPLVSAYGLKPSNKFDETTARIMLTLGGPLTLLASLD
FT                   SFAAAALPLAYFQNVKKEALGISRFSTYEQLCKVARVMAAKEFKFTDRYKKIFDETVKI
FT                   LTKCTPGTSGAASLVKFNEQIQILEGAFGKIVEDIGESSKPKNPSKNDRYS"
XX
SQ   Sequence 1086 BP; 349 A; 188 C; 217 G; 332 T; 0 other;

hm776015 Length: 1086  30-NOV-2010  Type: N  Check: 4696  ..

       1  taaaacaaac attcaaacaa cttcttcaaa gtgaactgct tcctaagtat
      51  tcaccatgtc tactgcaagg gtaaaagctt cagaaatcga gaaacttctc
     101  tctggtggag atgcagatgt ggtaattgaa tctgatgaag ctgaaggatt
     151  caatttcaag aactttgtgg tggcaaatga gggtatccga atgacattca
     201  ataatggtta cactattctt agaaacagag caggtatcta caagacaata
     251  aaatcaggga aattcacatt ccaaaacaaa cccattatta ttcctagtgc
     301  taatgtgagt cctagccagg atgattggac atttagaagg ttagaaggct
     351  ttatcagagc cagaatgctg gtagaactga ttgacacaaa gaacgaaaag
     401  gaaaaacaga aaatgtatga aaaaatctgc gggcttcctc tggtaagtgc
     451  atatggtttg aaacctagca acaagtttga tgaaaccaca gccaggatca
     501  tgttaacact aggcggtcct ctcaccttac tggcaagtct tgacagcttt
     551  gctgcagccg ctcttccttt agcttatttc cagaatgtga aaaaagaagc
     601  actcggtata agcagattct caacttatga gcagctttgc aaagttgcaa
     651  gagtcatggc agcaaaggaa ttcaagttta ccgacagata caagaagatt
     701  tttgatgaaa ctgtaaagat cctgactaaa tgcactcctg gaacttcagg
     751  tgcagcttca ttggtcaagt tcaacgaaca gatccaaatt cttgaaggtg
     801  ctttcggtaa gattgttgaa gacattggcg agtcttctaa acccaagaat
     851  ccctccaaga acgacagata ctcatagctg cttggtaatt gatccaccat
     901  ataatattag tctgtatttg tgttgtttaa gttagataag tttccctagt
     951  catattgtgt ttaatgttta tatctattta agttgtattt ttaagtttgc
    1001  tttgtgtgtg tttgtataat tcacttttat gttaagtttt actatttcgc
    1051  tataattttt aagtgcttgt taaatgtgtt taagag