Sequence of DPV Bean common mosaic virus

Bean common mosaic virus strain peanut stripe isolate LC1 polyprotein gene, partial cds.

ACC No: HM776073

Dated: 2012-03-02 | Length: 1082 | CRC: -1721494454

                
ID   HM776073; SV 1; linear; genomic RNA; STD; VRL; 1082 BP.
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AC   HM776073;
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DT   02-MAR-2012 (Rel. 112, Created)
DT   02-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Bean common mosaic virus strain peanut stripe isolate LC1 polyprotein gene,
DE   partial cds.
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KW   .
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OS   Bean common mosaic virus strain peanut stripe
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1082
RX   PUBMED; 21692560.
RA   Hou S.S., Chi Y.C., Liu Y.Y., Li X.D., Yu S.L., Li X.D.;
RT   "Molecular analysis of the coat protein gene of peanut stripe virus from
RT   China";
RL   Acta Virol. 55(2):123-129(2011).
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RN   [2]
RP   1-1082
RA   Li X.D., Hou S.S., Liu Y.Y., Chi Y.C.;
RT   ;
RL   Submitted (18-JUL-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1082
FT                   /organism="Bean common mosaic virus strain peanut stripe"
FT                   /host="peanut"
FT                   /strain="peanut stripe"
FT                   /isolate="LC1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:28353"
FT   CDS             <1. .993
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AEK24856.1"
FT                   /translation="YIAESALKTLYTNKRTRIEELAKYLAVLDFDYEVGCGESVHLQSG
FT                   SSTTQSPVLDAGVDTAKDKKEKSNKGKGPESSEGSGNNSRGTENQSMRDKDVNAGSKGK
FT                   IVPRLQKITKRMNLPMVKGNVILNLDHLLDYKPEQTDLFNTRATKMQFEMWYNAVKGEY
FT                   EIDDEQMSIVMNGFMVWCIDNGTSPDVNGTWVMMDGDEQVEYPLKPMVENAKPTLRQIM
FT                   HHFSDAAEAYIEMRNSERPYMPRYGLLRNLRDKNLARYAFDFYEVTSKTSDRAREAVAQ
FT                   MKAAALSNVNSKLFGLDGNVATTSENTERHTARDVNQNMHTLLGMGSAQ"
FT   mat_peptide     1. .129
FT                   /product="NIb"
FT   mat_peptide     130. .990
FT                   /product="coat protein"
XX
SQ   Sequence 1082 BP; 356 A; 189 C; 275 G; 262 T; 0 other;

hm776073 Length: 1082  02-MAR-2012  Type: N  Check: 6407  ..

       1  tacatagcag aatcagcact taaaacactt tataccaaca aaagaacaag
      51  aattgaagag ttggcaaagt atttggctgt gcttgatttt gactatgaag
     101  ttggatgcgg agaatctgtg catctacagt cagggagcag cacaacacaa
     151  tcaccagtgt tggatgctgg cgtggatact gccaaggaca agaaagagaa
     201  gagcaacaaa ggaaaaggtc ctgaaagcag tgaagggtca ggtaacaata
     251  gtcgtggaac agagaatcaa tcaatgagag acaaggatgt gaatgctggt
     301  tcaaaaggaa agattgttcc tcggcttcag aagatcacaa agagaatgaa
     351  tttgccaatg gtgaaaggga atgtgatctt gaatttagat catcttttgg
     401  attacaagcc agagcaaact gatcttttca acacaagagc aacaaagatg
     451  cagtttgaaa tgtggtacaa tgctgtgaag ggcgagtatg aaatagatga
     501  tgaacagatg tcaattgtga tgaacggctt tatggtgtgg tgtattgaca
     551  atggcacttc accggatgta aatggaacat gggtgatgat ggacggagac
     601  gagcaagtgg aatatcctct caaaccaatg gttgagaatg caaaacctac
     651  acttcgtcaa atcatgcacc atttctcaga tgcagctgaa gcatacattg
     701  agatgagaaa ttctgagcga ccatacatgc ctaggtatgg attgcttcgg
     751  aatttgaggg ataaaaatct agctcgctac gctttcgact tctatgaagt
     801  gacttccaag acatcagatc gtgcaaggga agcagtagca cagatgaagg
     851  cagcagccct cagcaatgtt aacagcaagt tgtttggact tgatgggaat
     901  gtggcaacaa ccagcgagaa tactgaaagg cacactgcaa gggacgttaa
     951  tcagaacatg cacacacttc ttggcatggg ttctgcgcag tagagattgg
    1001  gtcaaccgat cacagttagc atctcgcgtc gctgaatagt atcatatagt
    1051  agtcttttat gttctcttta gtttcagtgt gg