Sequence of DPV Aquareovirus E

Scophthalmus maximus reovirus segment S10, complete sequence.

ACC No: HM989939

Dated: 2011-06-28 | Length: 986 | CRC: 647679050

                
ID   HM989939; SV 1; linear; genomic RNA; STD; VRL; 986 BP.
XX
AC   HM989939;
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DT   15-MAR-2011 (Rel. 108, Created)
DT   28-JUN-2011 (Rel. 109, Last updated, Version 2)
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DE   Scophthalmus maximus reovirus segment S10, complete sequence.
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KW   .
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OS   Scophthalmus maximus reovirus
OC   Viruses; dsRNA viruses; Reoviridae; unclassified Reoviridae.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-986
RX   PUBMED; 21689389.
RA   Ke F., He L.B., Pei C., Zhang Q.Y.;
RT   "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG
RT   start site";
RL   BMC Genomics 12(1):323-323(2011).
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RN   [2]
RP   1-986
RA   Ke F., He L.B., Pei C., Zhang Q.Y.;
RT   ;
RL   Submitted (26-JUL-2010) to the INSDC.
RL   State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of
RL   Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan,
RL   Hubei 430072, China
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CC   GenBank Accession Numbers HM989930-HM989940 represent the complete
CC   genome of Scophthalmus maximus reovirus.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .986
FT                   /organism="Scophthalmus maximus reovirus"
FT                   /segment="S10"
FT                   /host="Scophthalmus maximus (turbot)"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Jun-2007"
FT                   /note="acronym: SMReV"
FT                   /db_xref="taxon:994485"
FT   CDS             28. .924
FT                   /codon_start=1
FT                   /product="VP7"
FT                   /note="outer capsid"
FT                   /db_xref="UniProtKB/TrEMBL:F2WJL6"
FT                   /protein_id="ADZ31986.1"
FT                   /translation="METKPILPTIATQFCDSLVRGHLSGAHIDGQWSTHLDDPELLTDG
FT                   GYIICACCFKVLLNWDGPTAYITHECHDSHGARRTGRHLAGNLLRMQDTIQRTVQDGFL
FT                   ALRSRDSLAKAASGAGNEMAAEAFEDIKETIKKARTGKVAKVMSLDRICGAVNCDRALT
FT                   FYGKDLADHPLVTGATALKTELEEVTGEKLARVRQTVVGGPVDVIVQTDAMPIPILYRP
FT                   AMEMIEPVVSKGARAIWAHAILNQSCTKLSTACKQRAYGRVGVNLANLSLSSANKSSAT
FT                   RCFKGCTPELFAPVGED"
XX
SQ   Sequence 986 BP; 222 A; 294 C; 266 G; 204 T; 0 other;

hm989939 Length: 986  28-JUN-2011  Type: N  Check: 84  ..

       1  gttttataaa gcacaccggt aaacaccatg gagaccaaac caattcttcc
      51  aactattgcg acccagttct gtgactcact cgtccgcggt catttatccg
     101  gagcccatat tgatggacaa tggtccaccc acctggatga ccccgaactg
     151  ctaactgacg gcggttacat catctgtgcc tgctgcttca aagtgctgct
     201  gaattgggat gggccaacgg catacatcac ccacgagtgt cacgattccc
     251  atggagctcg tcgcaccgga cgccacctcg caggaaacct gctgcgcatg
     301  caagacacaa tccaacgcac tgttcaagac gggttcctcg cgctgcgcag
     351  ccgagactca ctggccaaag ccgcatccgg tgccggtaat gagatggccg
     401  ctgaggcctt cgaagacatc aaggaaacca tcaagaaggc aagaaccggt
     451  aaagtcgcca aggtaatgag tctagaccgc atctgcggtg cagtcaactg
     501  tgatcgcgct ctcactttct atgggaagga tctggcagac catccgcttg
     551  tcactggtgc taccgcactc aagaccgagc tggaggaggt gactggtgag
     601  aagcttgcgc gagtgaggca gaccgtggtc ggtggtccag ttgacgtcat
     651  cgttcagacc gatgcgatgc ccatccccat tctataccga ccggccatgg
     701  aaatgatcga gccagtcgtc tccaaaggtg cacgtgccat ctgggctcac
     751  gccattctga accagagctg cacgaaactg agcaccgcct gcaagcagcg
     801  cgcctatggt cgagtcgggg ttaatctggc caatctctct ctctccagcg
     851  ccaacaagag cagcgccaca cgttgtttca aggggtgcac tccagagctg
     901  ttcgcgcctg tgggtgagga ttaggtctcc cggtggctcg ggattgccca
     951  ccccattgcc gtggcgtttg gtgtgctcca ttcatc