Sequence of DPV Raspberry latent virus
Raspberry latent virus segment S1, complete sequence.
ACC No: HQ012653
Dated: 2011-03-16 | Length: 3948 | CRC: -192418994
ID HQ012653; SV 1; linear; genomic RNA; STD; VRL; 3948 BP.
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AC HQ012653;
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DT 18-OCT-2010 (Rel. 106, Created)
DT 16-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Raspberry latent virus segment S1, complete sequence.
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KW .
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OS Raspberry latent virus
OC Viruses; dsRNA viruses; Reoviridae; unclassified Reoviridae.
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RN [1]
RP 1-3948
RX PUBMED; 21144872.
RA Quito-Avila D.F., Jelkmann W., Tzanetakis I.E., Keller K., Martin R.R.;
RT "Complete sequence and genetic characterization of Raspberry latent virus,
RT a novel member of the family Reoviridae";
RL Virus Res. 155(2):397-405(2011).
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RN [2]
RP 1-3948
RA Quito D.F., Martin R., Jelkmann W., Tzanetakis I., Keller K.;
RT ;
RL Submitted (03-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL Botany and Plant Pathology, Oregon State University, 3420 NW Orchard Av,
RL Corvallis, OR 97330, USA
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CC GenBank Accession Numbers HQ012653-HQ012662 represent the complete
CC genome of Raspberry latent virus isolate RpLV9A.
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FH Key Location/Qualifiers
FH
FT source 1. .3948
FT /organism="Raspberry latent virus"
FT /segment="S1"
FT /host="raspberry"
FT /isolate="RpLV9A"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="20-Oct-2007"
FT /identified_by="Diego Quito, Robert Martin, Wilhelm
FT Jelkmann"
FT /db_xref="taxon:907191"
FT CDS 30. .3860
FT /codon_start=1
FT /product="structural protein P1"
FT /db_xref="InterPro:IPR008580"
FT /db_xref="UniProtKB/TrEMBL:E3VL81"
FT /protein_id="ADO27686.1"
FT /translation="MTENHEDLLRTILANQPNYSKQIAKLTELIISQSKMLSHIQRDLY
FT GIHQGDCSTADHIARNMNLIFNHQRASEALARYIGSIPHSPQVGLYSYQSLKQYNHTLT
FT DSTISSFCPSLKCFQIYLGEKFTGRIEESFESRIPMRGTDRILFSEAYNIPRRQYFPIR
FT NEAFTATISVKSSFLHASKVMQYDVQISALGDIYFSQTFRIPKYKIGALEYYLSSCRGN
FT DGYVLNARASGDQIFDVVTPNQVQVYSEMCVIYHEVDLRFAEKVSAQSAEMRRVIVADT
FT ISVSDLGGIAFDPSHRVMNPDGTTSSDDEGLKWLVNYSMVEENSNINLKNVSDTFGMRF
FT CSQLETAVRQRILASLFTMSVDSLLDFSPSGGEVDLDSQSFLPESGSINLLSEAIVANT
FT RSITQILSSAIMYSEVDEDMKDLPFVSRAIPCLLPRKVNFHDSWLPGPTSTNSFNAWLY
FT LKDVGTTPNFRSKSDKPTFIMNCDIINECYIRRPSMVLRVHEDSDMIVEMHYVIKYLDS
FT SPSPSITKATIMPSAIVHRDPGLAMDVESLRVWGNTYAPSQGGRHELFSVASSTPNLQI
FT TVSEDQGICVEEIKCFVLFKNALNKIGLVEEKENLVSCESYGAGICGTSFFKAWNSTEY
FT TTSDGRQYYGIFAIDEKLEANNIYGDFLLRLGPWKYHDKGLVGESSILRTSSWYRRDGE
FT FEFDYGGMPTYDGVKGKIKVTLTTADGETGWNEWPYTGEYSFNLTSNLSDPTATSMFYS
FT APDVEKRYSKVSGEVKRLAQKVSKAVVFSNESGSRCPWLDTITARVLSLRLSLKVPITK
FT ATSGDLISCDQRFNDVEATIAGTRAIAEEALSISERNEQRINEIDSALKAMEDQANFEA
FT GIQMFAFAAELSMPVMGKVLTIMAEQTAKLSSVSARVIGKGLKGSSVATPLINLNARSK
FT GVEKAFNSIGKASVETRVMFKSIKKAPPKIDRPGIDLFQTDKNFVLYDPLEFQKFNVFT
FT AQKKSILGDGIIEGAGSNHKVAMKSDVTSSVLTVYHRPLQFLPKKISTAVHDLSVHGLS
FT SVDLTARERWLRKTLHPTHSYVTISYDYPVVKTNKTRHVITYTGIGDSNPGGLRTGDKA
FT AGVGTYSLEYDIIGLSKADGYRMMELRSHVDCGYTDEQCRNIYSTMFQRDVPSHMSLQE
FT AWEEIGAHSRRRTVVDTEVASTPVSLDREWRLRSMLEQKDWEYNLLFKNCQDYAHGLYY
FT YAQGGPVPKWISEKAQIQSYLDVSHRLDELSTWEATRDVVQYVDHGPLVSF"
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SQ Sequence 3948 BP; 1174 A; 765 C; 919 G; 1090 T; 0 other;
hq012653 Length: 3948 16-MAR-2011 Type: N Check: 6844 ..
1 agttttattc tcagtacaca ccagacaaga tgacagaaaa ccatgaagat
51 ctactgcgga ctatcttagc caaccaacct aattactcaa aacaaatagc
101 caaactcaca gaattgatca tctcacaatc aaaaatgcta tctcacattc
151 agcgcgacct ttacggaata catcaaggag attgtagcac agcggatcat
201 atagcgcgta atatgaattt aatttttaac catcagagag cgtccgaagc
251 attagctcga tatattggaa gcatccctca cagtcctcag gtcggtttgt
301 actcttacca gtccttaaaa cagtacaatc atactttgac agattctact
351 atttcttctt tttgtccaag tctaaagtgc tttcagatct acttaggtga
401 gaagttcacg ggaagaatcg aagagtcctt tgagtcaagg atcccaatga
451 gaggtaccga ccgaatattg ttctctgaag cctacaacat tcctagaaga
501 caatatttcc cgatccgaaa tgaagctttt actgcgacga tatctgttaa
551 atcatctttc ctacacgcat ccaaagtaat gcaatatgat gttcagatat
601 ctgctttagg agacatctac ttttctcaga cctttcggat tccaaagtat
651 aaaattggag ctttagaata ttatttatcg tcatgcagag gaaatgatgg
701 atatgttttg aatgcaagag cctctggaga tcagattttc gacgttgtca
751 ctccaaacca agtgcaagta tattccgaga tgtgtgtgat atatcatgag
801 gttgatttac gattcgccga gaaggttagc gctcaatcag ctgagatgag
851 gagggtaata gtggcagata cgatttctgt tagcgatctt ggaggaatag
901 cttttgaccc atctcataga gtgatgaatc cggacggaac gactagttct
951 gatgatgagg gattgaaatg gctagtcaat tattccatgg tggaagagaa
1001 cagcaacata aatcttaaaa acgtgtcaga tacttttgga atgaggtttt
1051 gctctcagct ggaaaccgca gttcgacaaa ggattcttgc ttctctattc
1101 accatgtctg tcgattcact tttagacttt tcgccttccg gaggagaagt
1151 ggatttagat tctcagtcgt tcctgccaga atcagggagt attaatttat
1201 tatctgaagc tattgttgca aacaccagat ccatcacaca aatcttgagc
1251 tccgctatta tgtactccga ggtggatgag gatatgaagg atttaccatt
1301 tgtttcacga gctattccgt gtctgctacc taggaaagtg aactttcacg
1351 atagctggtt acccggtcct acttctacaa atagctttaa tgcatggctg
1401 tacctaaagg acgttggaac cactcctaat tttcgaagta agtctgataa
1451 gccaacgttc attatgaatt gcgatataat caacgaatgt tatataagaa
1501 gacctagcat ggtgttaaga gtgcatgaag atagtgatat gatagttgaa
1551 atgcattatg tcattaaata tcttgacagt tcacccagcc cctcgatcac
1601 caaagctact atcatgccgt ctgctatcgt tcaccgtgat cctgggttag
1651 caatggatgt cgagagtttg agagtttggg gaaacactta cgcaccgagt
1701 caaggaggaa gacatgagct cttttccgtc gcatcatcca cgcccaacct
1751 ccaaataact gtttctgagg atcaagggat atgtgttgaa gagattaaat
1801 gttttgtgtt gtttaagaat gctttaaata agataggatt ggttgaagag
1851 aaagagaatt tggtatcgtg tgagtcatac ggcgcgggta tatgcggcac
1901 atccttcttt aaggcttgga attccactga atacacaact tctgacgggc
1951 gtcaatatta tggaatattt gcaatcgatg agaaactgga agccaacaat
2001 atctatgggg atttcttact gcgtttaggt ccatggaaat atcatgataa
2051 ggggttagtt ggagaatcat cgattttaag aacttcttct tggtatagaa
2101 gggatggaga atttgagttc gactatggtg gaatgcccac ttatgacggt
2151 gtcaaaggaa agattaaggt aacgttgact acggcagatg gggagacggg
2201 gtggaacgag tggccataca ctggggagta ttcatttaat ttgacgtcaa
2251 atttgtctga tcccacagcc acttcaatgt tctacagcgc acctgatgtt
2301 gagaagcgat atagtaaagt ttctggtgag gtgaaacgct tggcccagaa
2351 agtgtccaaa gcagtggtgt tcagtaatga aagtggttcg agatgcccat
2401 ggctagatac aattactgcg cgagtattat cgcttcgatt gtccctaaaa
2451 gtacctatca caaaagccac atcgggcgat ttaatatctt gcgatcagcg
2501 tttcaacgac gtcgaagcca ccattgctgg aacaagagcg atagcagaag
2551 aggccctatc catttcggaa aggaatgagc agagaattaa cgagatcgat
2601 agtgcattga aagcaatgga ggatcaagct aatttcgaag ctgggattca
2651 gatgttcgcg tttgctgctg agttatcaat gccagtaatg ggtaaggtgc
2701 taacgataat ggctgaacag acagctaaat tatcaagtgt gagcgcgcga
2751 gtaatcggaa agggcctgaa aggatcatca gtagcgacgc ctctaattaa
2801 tttaaatgct cgttctaaag gggttgagaa ggctttcaat agcattggga
2851 aagcgtctgt tgagacgaga gtcatgttta agtcgattaa aaaggcgcca
2901 ccaaaaattg acagaccggg catcgatttg tttcagacgg ataaaaactt
2951 tgttttgtat gaccccctag agtttcagaa attcaatgta tttacagctc
3001 agaaaaagtc tattttaggg gatgggataa tcgagggtgc agggtccaat
3051 cacaaagtgg caatgaagag cgatgttacg agcagcgtcc taaccgtcta
3101 tcatcgtcca ttgcaatttt tacctaagaa aatatcgaca gcggtacatg
3151 atctatctgt tcatggattg agctctgttg accttactgc ccgagaaagg
3201 tggcttagaa aaacactgca tcctactcat tcctacgtta ccatctcgta
3251 cgattaccca gttgtcaaga cgaataagac gagacatgtg atcacataca
3301 caggaatcgg cgattctaat ccagggggtt tgagaactgg tgataaagcg
3351 gctggagtcg gaacctattc tttagagtat gatatcatcg ggttaagcaa
3401 agctgacggt tatagaatga tggagttgag atctcacgtc gattgcggat
3451 acactgatga acaatgccgt aacatttact ccacaatgtt tcaaagagac
3501 gttccatctc atatgtcgtt gcaggaagcg tgggaagaga taggcgcaca
3551 ctccagaaga cgaacggtcg ttgatacaga agtagcatcc acaccggtga
3601 gtttagatag agaatggcgc ctaagatcaa tgttggagca gaaagactgg
3651 gagtataatc tactttttaa gaattgtcaa gactacgctc acggtctcta
3701 ttactatgcc caaggtggac ctgttcctaa gtggatttct gaaaaggccc
3751 aaatccagtc atacctcgat gtatcgcata gattagatga gctctcgacc
3801 tgggaagcca cacgagatgt cgtgcagtac gttgaccatg gacctttggt
3851 gtcattttag aggtgcactt cctccctcta gtgggtgatt ccactatggt
3901 gcgttgtgat agggcagtgg gtaagtccct cagagaataa gcgaatac