Sequence of DPV Tomato leaf curl Hainan virus
Tomato leaf curl Hainan virus isolate Vietnam/Hungyen/papaya/2010, complete genome.
ACC No: HQ162268
Dated: 2011-02-03 | Length: 2748 | CRC: -277500214
ID HQ162268; SV 1; circular; genomic DNA; STD; VRL; 2748 BP.
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AC HQ162268;
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DT 03-FEB-2011 (Rel. 107, Created)
DT 03-FEB-2011 (Rel. 107, Last updated, Version 1)
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DE Tomato leaf curl Hainan virus isolate Vietnam/Hungyen/papaya/2010, complete
DE genome.
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KW .
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OS Tomato leaf curl Hainan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2748
RA Ha C.V., Le H.V., Tran T.N.;
RT "Identification of begomoviruses in Vietnam";
RL Unpublished.
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RN [2]
RP 1-2748
RA Ha C.V., Le H.V., Tran T.N.;
RT ;
RL Submitted (19-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL Research Centre for Tropical Plant Diseases, Hanoi University of
RL Agriculture, Trauqui - Gialam, Hanoi, Vietnam
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FH Key Location/Qualifiers
FH
FT source 1. .2748
FT /organism="Tomato leaf curl Hainan virus"
FT /host="papaya"
FT /isolate="Vietnam/Hungyen/papaya/2010"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Hung Yen province"
FT /collection_date="2010"
FT /note="sample 31"
FT /db_xref="taxon:664980"
FT gene 132. .482
FT /gene="AV2"
FT CDS 132. .482
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="ADW24224.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLLRDL
FT ISVIRAKDYAEASRRYSHSHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHV
FT PKAQDVQNVQKP"
FT gene 292. .1065
FT /gene="AV1"
FT CDS 292. .1065
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /protein_id="ADW24223.1"
FT /translation="MPKRPADIVIPTPASKVPRRLNFDSPYASRAAAPTVLVTNKRRSW
FT VNRPMYRKPRMYRTYKSPDVPRGCEGPCKVQSYEQRHDVEHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSVYVLGKIWMDEKIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATATGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1062. .1466)
FT /gene="AC3"
FT CDS complement(1062. .1466)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /protein_id="ADW24227.1"
FT /translation="MDSRTGEAITATQAESGVYIWTVKNPLYFKITNHDERPFLMNHDI
FT ITIQVQFNYNLRKALGIHQCFLIFQIWTRLRPQTWRFLRVFRVQCMKYLDNLGVISIYN
FT VIRACDHVLWDVLEKTEYVTHSNIIKFNLY"
FT gene complement(1207. .1611)
FT /gene="AC2"
FT CDS complement(1207. .1611)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /protein_id="ADW24226.1"
FT /translation="MRSSSPSKSHSTQVPIKVQHRNAEKATRRRRVDLPCGCSYFIALG
FT CHNYGFSHRGSYHCNSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQP
FT EESVGNTPMFSNLPDLDSFTSSDLAFLKSI"
FT gene complement(1514. .2599)
FT /gene="AC1"
FT CDS complement(1514. .2599)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep protein"
FT /protein_id="ADW24225.1"
FT /translation="MPPPKKFLINAKNYFLTYPHCSLSKEEALSQLLALTTPTNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYM
FT DKDGGVIDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPVSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLEEEKNSALKNWAIKNAIFVTLQVAL
FT YSGSYQGATPQRRESNEETES"
FT gene complement(2149. .2442)
FT /gene="AC4"
FT CDS complement(2149. .2442)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ADW24228.1"
FT /translation="MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQ
FT QMSKPIWTKTEALLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY"
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SQ Sequence 2748 BP; 744 A; 557 C; 605 G; 842 T; 0 other;
hq162268 Length: 2748 03-FEB-2011 Type: N Check: 5670 ..
1 accggatggc cgcgattttt tttacatggt ccccaccact aataaatgtt
51 ctccacttag atcgctccct caaagcctat ttaattcaaa tccattatat
101 atacttggtc cccaagtact cactttaaaa tatgtgggat cctttactga
151 atgagtttcc cgaaaccgta cacggtttta ggtgtatgtt agcgattaaa
201 tatttgcaat tagtagaaaa tacatactct cctgatacat tagggtacga
251 tttgcttcgt gatttaattt cagttattcg tgctaaggac tatgccgaag
301 cgtcccgcag atatagtcat tcccactccc gcatccaagg tgcctcgccg
351 gctgaatttc gacagcccgt atgccagccg tgctgctgcc cccactgtcc
401 tcgtcacaaa caaaaggagg tcatgggtga atcggcccat gtaccgaaag
451 cccaggatgt acagaacgta caaaagccct gatgttcctc gaggatgtga
501 aggcccatgt aaggttcagt cctatgaaca gcgtcatgat gtagagcacg
551 taggtaaagt catttgtgtg tcggatgtta ctcgtggtaa cgggttgact
601 catcgagtgg gaaagaggtt ttgtgttaag tctgtttatg ttttgggcaa
651 gatatggatg gatgagaaaa ttaagaccaa gaatcacact aatactgtaa
701 tgtttttttt agttcgtgat aggagaccat ttgggactcc acaggatttt
751 ggtcaggtgt ttaacatgta tgataacgag ccaagtacag ccactgtgaa
801 gaacgacaac agagatcgct ttcaagttct acggcgtttt caggcgactg
851 ctactggtgg tcagtatgca agtaaggagc aagcaatagt taggaagttt
901 atgaaggtga acaaccatgt gacgtataat catcaagaag ctgcgaagta
951 tgacaatcac acagagaatg ctcttttgtt gtatatggca tgtactcatg
1001 ctagtaatcc tgtgtatgct actttgaaaa tcagaatcta tttctatgat
1051 tctgttcaga attaataaag attgaatttt attatatttg aatgtgttac
1101 atattctgtt ttttccaata catcccataa tacatgatca catgctctaa
1151 ttacattgta aatactaatt acacccaaat tatctaaata tttcatacat
1201 tgaaccctaa atactcttaa gaaacgccaa gtctgaggac gtaaacgagt
1251 ccagatctgg aagattagaa aacattggtg tattcccaac gctttcctca
1301 ggttgtaatt gaattggact tgtattgtga tgatgtcgtg gttcatcaga
1351 aatggtctct cgtcgtggtt ggttatcttg aaatataggg gatttttgac
1401 cgtccagata tatacgccac tctctgcttg agttgcagtg atagcttccc
1451 ctgtgcgaga atccataatt gtgacagcct agtgcaatga agtatgaaca
1501 gccacaaggg agatcaactc tccgtctcct cgttgctttc tcggcgttgc
1551 ggtgttgcac cttgatagga acctgagtag agtgcgactt ggagggtgac
1601 gaagatcgca ttttttattg cccagttttt aagcgcgctg ttcttctctt
1651 cctccaagaa ttctttatag cttgaattgg ggccgggatt gcagaggaag
1701 atagtgggaa ttcccccttt aatttgaacg ggttttccgt actttgtgtt
1751 gctttgccag tccctttggg cccccatgaa ttctttaaaa tgctttaggt
1801 agtgcggatc aacgtcatca atgacgttgt accaggcatc attactatac
1851 acttttggac tcaaatcaag atgaccacac aggtaattat gtggtcctaa
1901 tgacctagcc cacatcgtct tacccgtcct gctatcaccc tctatgacta
1951 tacttaccgg tcgtaatggc cgcgcagcgg cactgacaac gttctctgca
2001 gcccactctt cgagttcctc tgggactcga tcaaacgaag aagaagaaaa
2051 aggggaaacg taaacctcca ttggaggagt aaagatccta tctaaattac
2101 tatttaaatt atgaaactgt aaaacaaaat ctttgggagc tttctccctt
2151 aatatattga gggccgtagc tttggaccct gaattgattg cctcggcata
2201 tgcgtcgttt gcagactggc aacctcctct agccgatctt ccatcgatct
2251 ggaaaactcc atgatcaata acgcctccgt ctttgtccat ataggctttg
2301 acatctgttg agcttttagc gctctgaatg ttcggatgga aatgtgctga
2351 cctggttggg gatacgagat cgaagaatct gttgttttgg catttgaatt
2401 ttccttcgaa ctggatgagg acatgcaggt gaggagaccc atcttcgtgt
2451 aattccctgc agattcgaat gaataattta tttgttggtg tcgttagagc
2501 taacaattgg gaaagtgcct cttctttgct tagtgagcaa tgtgggtatg
2551 tgaggaaata gtttttggca tttattagaa attttttggg cggaggcatg
2601 ttgacttggt caatcgggtc ctctcaaact tagctatgca atcggggaat
2651 gggtccttat ttatatgtga ggacctaaat ggcacaattg taaataatca
2701 tattaaatcc aaaattcaaa ttggtaaagc ggccatccgt ataatatt