Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate TSWV-Gneung nucleocapsid protein (N) gene, complete cds.

ACC No: HQ260978

Dated: 2010-12-06 | Length: 777 | CRC: 644660869

                
ID   HQ260978; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
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AC   HQ260978;
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DT   06-DEC-2010 (Rel. 107, Created)
DT   06-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Tomato spotted wilt virus isolate TSWV-Gneung nucleocapsid protein (N)
DE   gene, complete cds.
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KW   .
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OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-777
RA   Chung B.N.;
RT   "TSWV isolates showing different pathotype in red pepper";
RL   Unpublished.
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RN   [2]
RP   1-777
RA   Chung B.N.;
RT   ;
RL   Submitted (14-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Horticultural Herbal & Environment Department, National Institute of
RL   Horticultural & Herbal Science, 540-41, Top-dong, Kwon-sun Gu, Suwon
RL   441-440, Rep. of Korea
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FH   Key             Location/Qualifiers
FH
FT   source          1. .777
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Capsicum annuum"
FT                   /isolate="TSWV-Gneung"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /db_xref="taxon:11613"
FT   gene            complement(1. .777)
FT                   /gene="N"
FT   CDS             complement(1. .777)
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="ADR32108.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ   Sequence 777 BP; 215 A; 177 C; 133 G; 252 T; 0 other;

hq260978 Length: 777  06-DEC-2010  Type: N  Check: 7599  ..

       1  ttaagcaagt tctgcgagtt ttgcctgttt tttaacccca aacatttcat
      51  agaacttgtt aagagtttca ctgtaatgtt ccatagcaat acttccttta
     101  gcattaggat tgctggagct aagtatagca gcatactctt tccccttctt
     151  cacctgatct tcattcattt caaatgcttt gcttttcagc acagtgcaaa
     201  ctttccctaa ggcttccctg gtgtcatact tctttgggtc gatcccaagg
     251  tccttgtatt ttgcatcctg atatatagcc aagacaacac tgatcatctc
     301  aaagctatcg actgaagcaa taagaggtaa gctacctccc agcattatgg
     351  caagcctcac agactttgca tcatcaagag gtaatccata ggcttgaatc
     401  aaagggtggg aagcaatctt agatttgata gtattgagat tctcggaatt
     451  cccagtttcc tcaacaagcc tgaccctgat caagctatca agccttctga
     501  aggtcatgtc agtggctcca atcctgtctg aagttttctt tatggtaatt
     551  ttaccaaaag taaaatcact ttgcttaata accttcatta tgctctgacg
     601  attcttcagg aatgtcagac atgaaataac actcatcttt ttgatctggt
     651  caaggttttc cagacaaaaa gtcttgaagt tgaatgctac cagattctga
     701  tcttcctcaa actcaaggtc tttgccttgt gtcaacaaag caacaatgct
     751  ttccttagtg agcttaacct tagacat