Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate TSWV-Jmj nucleocapsid protein (N) gene, complete cds.

ACC No: HQ267710

Dated: 2011-03-28 | Length: 777 | CRC: -961206586

                
ID   HQ267710; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
XX
AC   HQ267710;
XX
DT   28-MAR-2011 (Rel. 108, Created)
DT   28-MAR-2011 (Rel. 108, Last updated, Version 1)
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DE   Tomato spotted wilt virus isolate TSWV-Jmj nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-777
RA   Chung B.N.;
RT   "TSWV isolates showing different pathotype in red pepper";
RL   Unpublished.
XX
RN   [2]
RP   1-777
RA   Chung B.N.;
RT   ;
RL   Submitted (17-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Horticultural Herbal and Environment Department, National Institute of
RL   Horticultural & Herbal Science, 540-41, Top-Don, Kwonsun-Gu, Suwon 441-440,
RL   Korea
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FH   Key             Location/Qualifiers
FH
FT   source          1. .777
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Capsicum annuum"
FT                   /isolate="TSWV-Jmj"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="Jul-2010"
FT                   /db_xref="taxon:11613"
FT   gene            1. .777
FT                   /gene="N"
FT   CDS             1. .777
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="ADZ99441.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDXGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
XX
SQ   Sequence 777 BP; 252 A; 133 C; 177 G; 214 T; 1 other;

hq267710 Length: 777  28-MAR-2011  Type: N  Check: 756  ..

       1  atgtctaagg ttaagctcac taaggaaagc attgttgctt tgttgacaca
      51  aggcaaagac cttgagtttg aggaagatca gaatctggta gcattcaact
     101  tcaagacttt ttgtctggaa aaccttgacc agatcaaaaa gatgagtgtt
     151  atttcatgtc tgacattcct gaagaatcgt cagagcataa tgaaggttat
     201  taagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatc
     301  agggtcaggc ttgttgagga aactgggaat tccgagaatc tcaatactat
     351  caaatctaag attgcttccc accctttgat tcaagcctat ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctggg aggtagctta
     451  cctcttattg cttcagtcga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaggaccy tgggatcgac ccaaagaagt
     551  atgacaccag ggaagcctta gggaaagttt gcactgtgct gaaaagcaaa
     601  gcatttgaaa tgaatgaaga tcaggtgaag aaggggaaag agtatgctgc
     651  tatacttagc tccagcaatc ctaatgctaa aggaagtatt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg ggttaaaaaa
     751  caggcaaaac tcgcagaact tgcttaa