Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate TSWV-Kjj nucleocapsid protein (N) gene, complete cds.

ACC No: HQ267712

Dated: 2011-03-28 | Length: 777 | CRC: 627779888

                
ID   HQ267712; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
XX
AC   HQ267712;
XX
DT   28-MAR-2011 (Rel. 108, Created)
DT   28-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Tomato spotted wilt virus isolate TSWV-Kjj nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-777
RA   Chung B.N.;
RT   "TSWV isolates showing different pathotype in red pepper";
RL   Unpublished.
XX
RN   [2]
RP   1-777
RA   Chung B.N.;
RT   ;
RL   Submitted (17-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Horticultural Herbal and Environment Department, National Institute of
RL   Horticultural & Herbal Science, 540-41, Top-Don, Kwonsun-Gu, Suwon 441-440,
RL   Korea
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .777
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Capsicum annuum"
FT                   /isolate="TSWV-Kjj"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="Jul-2010"
FT                   /db_xref="taxon:11613"
FT   gene            1. .777
FT                   /gene="N"
FT   CDS             1. .777
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="ADZ99443.1"
FT                   /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
XX
SQ   Sequence 777 BP; 259 A; 135 C; 169 G; 213 T; 1 other;

hq267712 Length: 777  28-MAR-2011  Type: N  Check: 7768  ..

       1  atgtctaagg ttaagctcac taaggaaaac attgttgctt tgttgacaca
      51  aagcaaagat cttgaatttg aggaagacca gaatctggta gcattcaact
     101  tcaagacttt ttgtctggaa aaccttgacc agatcaagaa gatgagcatt
     151  atttcatgtc tgacattcct gaagaatcgt cagagtataa tgaaggttat
     201  taagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatc
     301  agggtcaggc ttgtcgagga aaccgggaat tctgagaatc tcaacactat
     351  caaatctaag attgcttctc accctttgat ccaagcctat ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctggg aggtagctta
     451  cctcttattg cttcagttga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaagacct cgggatcgat ccaaaaaagt
     551  atgacaccag ggaagcccta ggaaaagttt gcactgtgct aaaaagcaar
     601  gcatttgaaa tgaatgaaga tcaggtgaag aaagggaaag agtatgctgc
     651  tatacttagc tccagcaatc ctaatgctaa aggaagtatt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgttcgg ggttaaaaaa
     751  caggcaaaac ttgcagaact tgcttaa