Sequence of DPV Pepper mottle virus

Pepper mottle virus isolate Tw1 coat protein gene, partial cds.

ACC No: HQ329082

Dated: 2011-05-31 | Length: 1088 | CRC: 1945540999

                
ID   HQ329082; SV 1; linear; genomic RNA; STD; VRL; 1088 BP.
XX
AC   HQ329082;
XX
DT   05-APR-2011 (Rel. 108, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 2)
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DE   Pepper mottle virus isolate Tw1 coat protein gene, partial cds.
XX
KW   .
XX
OS   Pepper mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1088
RA   Cheng Y.H., Deng T.C., Chen C.C., Liao Y., Chang C.A., Chiang C.H.;
RT   "First report of Pepper mottle virus in bell pepper in Taiwan";
RL   Plant Dis. 95(5):617-617(2011).
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RN   [2]
RP   1-1088
RA   Cheng Y.H., Deng T.C., Chen C.C., Liao J.Y., Chang C.A.;
RT   ;
RL   Submitted (29-SEP-2010) to the INSDC.
RL   Plant Pathology Division, Agricultural Research Institute, No. 189,
RL   Jhongjheng Rd., Wufong, Taichung 41301, Taiwan
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1088
FT                   /organism="Pepper mottle virus"
FT                   /host="Capsicum annuum L. (bell pepper)"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="Tw1"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan"
FT                   /collected_by="Y. H. Cheng"
FT                   /collection_date="15-Sep-2006"
FT                   /db_xref="taxon:12209"
FT   CDS             <1. .822
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="UniProtKB/TrEMBL:F2X334"
FT                   /protein_id="AEA48275.1"
FT                   /translation="SSSRSDTLDAGEEKKKNKEVATVSDGMKKKEVESTRDSDVNAGTV
FT                   GTFTVPRIKSITEKMRMPKQKKKGVLNLAHLLEYKPSQVDISNTRSTQAQFDNWYNEVM
FT                   KAYDLQEEAMGTAMNGLMVWCIENGTSPNISGTWTMMDGDQQVEFPLKPVIENAKPTFR
FT                   QIMAHFSDVAEAYIEMRNKQEPYMPRYGLVRNLRDMGLARYAFDFYEVTSRTSTRAREA
FT                   HIQMKAAALKSAQTRLFGLDGGIGTQGENTERHTTEDVSPDMHTLLGVRNM"
FT   3'UTR           823. .1088
XX
SQ   Sequence 1088 BP; 360 A; 199 C; 259 G; 270 T; 0 other;

hq329082 Length: 1088  31-MAY-2011  Type: N  Check: 6046  ..

       1  agcagctcaa gatcagacac attggacgct ggagaggaga aaaagaaaaa
      51  taaagaagta gccactgtgt ccgatggaat gaaaaagaag gaggttgaat
     101  caacacgcga ttctgatgtg aatgcgggaa ctgttggaac attcaccgtt
     151  ccaagaatca aatcaatcac tgagaagatg cgtatgccaa aacaaaagaa
     201  aaagggtgtt ctcaacttgg ctcatttact tgaatacaaa ccaagccaag
     251  tcgacatatc gaatactcgt tcaacccagg cacaatttga caattggtat
     301  aatgaagtta tgaaagcata cgatctacaa gaggaggcaa tgggtacagc
     351  gatgaatggc ttaatggttt ggtgcattga aaatggcacg tccccaaata
     401  ttagtggaac atggaccatg atggatggag accaacaggt ggaattccca
     451  ttaaagcccg tgatagagaa tgccaagccg acttttcggc aaataatggc
     501  gcacttttct gatgtggctg aggcatatat agaaatgcgc aataagcaag
     551  aaccatacat gccacgatat ggtttggttc gaaatttacg agacatgggt
     601  ctggctcgat acgcatttga cttctatgaa gtcacatcac gtacgtcaac
     651  acgtgctcgc gaagcccata tccaaatgaa agcagcagca ttgaaatctg
     701  ctcaaacaag gctatttgga ttggatggtg gcataggaac acaaggagaa
     751  aacacagagc gccataccac tgaagatgtg agccccgaca tgcataccct
     801  gcttggggtc agaaatatgt gactgatgtg gtctctggga tgaaatatta
     851  ttatatgtag tatgcaatat atagtatggc ttttctcgtt ccagtcttta
     901  tattaatgag agtaacttaa gtaagtaatt tgtacttcaa ggattaatca
     951  aggtgactct ctgacactct cagtgaggtg acttgtttag tctgagttta
    1001  cttattgtga gtataaagaa tctctcagaa aacgagagtg acttctagac
    1051  acactctagg aggtgatcgt agttggcatg agagagac