Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus isolate SPLCV-PE[BR:Cau1:09], complete genome.
ACC No: HQ393462
Dated: 2012-11-14 | Length: 2828 | CRC: -87712311
ID HQ393462; SV 1; circular; genomic DNA; STD; VRL; 2828 BP.
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AC HQ393462;
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DT 27-MAR-2011 (Rel. 108, Created)
DT 14-NOV-2012 (Rel. 114, Last updated, Version 4)
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DE Sweet potato leaf curl virus isolate SPLCV-PE[BR:Cau1:09], complete genome.
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KW .
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OS Sweet potato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2828
RX PUBMED; 23082767.
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Moriones E., Navas-Castillo J.;
RT "Genetic diversity and recombination analysis of sweepoviruses from
RT Brazil";
RL Virol J 9:241-241(2012).
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RN [2]
RP 1-2828
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Moriones E., Navas-Castillo J.;
RT "Genetic diversity by extensive recombination in the complex of monopartite
RT begomoviruses infecting sweet potato in Brazil";
RL Unpublished.
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RN [3]
RP 1-2828
RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O.,
RA Ribeiro S.G., Navas-Castillo J.;
RT ;
RL Submitted (11-OCT-2010) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2828
FT /organism="Sweet potato leaf curl virus"
FT /host="Ipomoea batatas"
FT /strain="Pernambuco"
FT /isolate="SPLCV-PE[BR:Cau1:09]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Pernambuco"
FT /lat_lon="8.14 S 35.47 W"
FT /collected_by="Simone G. Ribeiro"
FT /collection_date="2009"
FT /clone="PE49Bam76"
FT /db_xref="taxon:100755"
FT CDS 98. .469
FT /codon_start=1
FT /product="V2"
FT /protein_id="ADZ96591.1"
FT /translation="MLFQSWSPSMAELWDPLQNPLPDTLYGFRCMLSIKYLQSILKKYE
FT PGTLGFELCSELIRIFRVRQYDRANARYAEISSVWGETGKTEAELRDSYRALHWECCPN
FT CCPKLCPGFKRRPDEEKEG"
FT CDS 294. .1058
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /protein_id="ADZ96592.1"
FT /translation="MTGRMRVTQRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMEVPHRGTFVCVSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLLRDRRPNKDPLNFDQVFTMYDNEPTTA
FT KIRTDLRDRMQVLKKFSVTVSGGSYNHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE
FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN"
FT CDS complement(1074. .1508)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /protein_id="ADZ96593.1"
FT /translation="MDSRTGESLNHAQTMRALEFDTNPMSAGRTAPFHLRLMYVHESAQ
FT GRTILKFQMRVNHRERKQLGFHKIFLQFRISTTRLTGAIHSWTGILERLKWRICNEIAS
FT LGFISLVNLVFVIRYLPRVCSWIDEIDTIDCTDDVKVLLY"
FT CDS complement(1225. .1671)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /protein_id="ADZ96594.1"
FT /translation="MSNLPSGIKRKCPIQEPLHEAAKKAKRKVPESRTRIVWKGCGCSA
FT FITQTCKFQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTIPPETDVRPRERTGENHP
FT QIPNEGQPSGEETTWFPQDLPAVQDIDNPANWCYSQLDWYFGTP"
FT CDS complement(1580. .2674)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /protein_id="ADZ96595.1"
FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPTNKKYIH
FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPSRSNHFHPNIQGAKSSSDVKSYV
FT DKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAAMQIIREKLPEKYLFQYH
FT NLVSNLDRIFSPPSSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WNQEEVSNSGATARSGEEGQEESS"
FT CDS complement(2260. .2517)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ADZ96596.1"
FT /translation="MGNLTSMCWCSSKVNSSAQIADSSTLCHPQGRITFTPTSRELNHR
FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLTTQPQRL"
XX
SQ Sequence 2828 BP; 750 A; 581 C; 677 G; 820 T; 0 other;
hq393462 Length: 2828 14-NOV-2012 Type: N Check: 6270 ..
1 accggtgccc gccgcgcccc ttaaaagtgg gccccaccaa tgacaacgcg
51 tattttccgt actctctttt aatgatgaca ttgctttata aggaccaatg
101 ctgttccagt cttggtcgcc aagtatggct gaattgtggg accctttgca
151 gaacccacta ccagatactt tatacggttt taggtgtatg ctatccataa
201 aatacttgca aagtattttg aaaaaatacg agccaggaac cctagggttc
251 gagctctgtt cggagttaat ccgtatcttc agggtcaggc agtatgacag
301 ggcgaatgcg cgttacgcag agatttcatc cgtatggggg gagaccggta
351 agacggaggc tgaacttcga gacagctatc gtgccctaca ctgggaatgc
401 tgtcccaatt gctgcccgaa gctatgtccc ggtttcaaga ggcgtccgga
451 tgaagagaaa gaggggtgac cgcatcccga agggatgtgt tggtccctgt
501 aaggtccagg actatgagtt caagatggaa gttcctcaca ggggaacgtt
551 tgtctgtgtc tcggatttta caagggggac tgggcttaca catcgccttg
601 gtaagcgtgt ttgtgttaag tcaatgggta tcgatgggaa ggtctggatg
651 gatgacaatg ttgcgaagag agatcacacc aatatcatca cgtattggtt
701 gcttcgtgac aggaggccca ataaggatcc actgaacttt gatcaagttt
751 tcaccatgta tgacaatgag ccgactactg ctaagattcg aacggatctg
801 agagatagaa tgcaggtgtt gaagaagttc tcagttacag tttcaggagg
851 ttcatacaat cataaagagc aggcattaat taggaagttt tttaagggtt
901 tgtataatca tgtgacttat aatcacaaag aagaagctaa atatgagaat
951 cagttagaaa atgctcttat gctgtatagt gctagcagtc atgctagtaa
1001 tcctgtgtat cagaccctgc gttgcagggc ttatttttat gattcacaca
1051 ataattaata aacttttatt ttattaatac agtaatacct ttacatcatc
1101 agtacaatcg attgtatcta tttcatctat ccaagaacat actcttggga
1151 gatatctaat aacaaaaact aaattaacta gactaataaa ccctaaacta
1201 gctatttcat tacatattcg ccatttaagg cgttccaaaa taccagtcca
1251 gctgtgaata gcaccagtta gccgggttgt cgatatcctg aactgcagga
1301 agatcttgtg gaaaccaagt tgtttcctct cccgatggtt gaccctcatt
1351 tggaatttga ggatggttct cccctgtgcg ctctcgtgga cgtacatcag
1401 tctcaggtgg aatggtgcag tccgacccgc agacatgggg ttggtgtcga
1451 attctagtgc tctcatagtc tgagcatgat ttagtgattc ccctgtgcgt
1501 gaatccatgc tggaatttgc aggtttgggt tatgaaggct gaacagccgc
1551 aacccttcca cactatcctc gtccttgatt caggaacttt cctcttggcc
1601 ttcttcgccg cttcgtgcag tggctcctga attggacact tcctcttgat
1651 tccagaaggg agattggaca tcgcagaata tagcgtttgc tgttgcccaa
1701 ttcttgagtg ctccttgctc tggtttgtct agccagagtt taaatgagga
1751 accctctcct ggattgcaga ggaagatagt gggaattccg cctttaattt
1801 gaactggctt tccgtattta cagtttgatt gccagtcctt ctgggccccc
1851 atgaattctt taaagtgctt taggtattgt gggttgacgt catcaatgac
1901 gttataccaa gcactgttgc tgtaaacttt tggactaaga tctaaatgcc
1951 cacacaaata attgtgaggg cccaaagacc tggcccatac tgttttgcct
2001 attctgcttg ggccttcaat aacaatggat atgggtctat ccggccgcgc
2051 agcggaatcc atgacatttt cagcggccca gtcgctgata atgtcaggaa
2101 cggcattgaa agaagaagaa gaaaaaggtg aagaatatac agaagatggt
2151 ggagaaaaaa tcctatctaa attagaaact aaattatgat attgaaataa
2201 atatttttca gggagcttct ccctgattat ttgcatcgca gcttctttag
2251 aacctgcgtt tagagcctct gcggctgcgt cgttagcagt ctgctgacct
2301 cctctagcag atctgccgtc gacctggaat tcaccccagg tgagggtatc
2351 cccgtcctta tcaacgtagg acttgacatc ggacgatgat ttagctccct
2401 ggatgttggg gtgaaagtga ttcgaccttg agggtgacac aaggtcgaag
2451 aatctgctat ttgtgcagac gaatttacct tcgaactgca ccagcacatg
2501 gaggtgaggt tccccatcct cgtgcagttc tttggctatg tgtatgtatt
2551 ttttgttggt tggggtttgg atatttagca gttgggctag gcagtcctct
2601 ttagagagag aacagcgtgg ataggtaatg aaataatttt tggcttggat
2651 tttaaaacgt ttgggaggag ccatttggag acaatcaata attcaaatga
2701 attggagact ggagacaata tatagtatgt ctccaaatgg cattttggta
2751 attaagaaga tccttttagc tttaattcaa aatccgacaa cgttgggccc
2801 acctaaaggc gggcaccgta ttaatatt