Sequence of DPV Eothenomys miletus hantavirus LX309
Eothenomys miletus hantavirus LX309 segment large, complete sequence.
ACC No: HQ404253
Dated: 2011-05-31 | Length: 6538 | CRC: 1994838829
ID HQ404253; SV 1; linear; viral cRNA; STD; VRL; 6538 BP.
XX
AC HQ404253;
XX
DT 31-MAY-2011 (Rel. 109, Created)
DT 31-MAY-2011 (Rel. 109, Last updated, Version 1)
XX
DE Eothenomys miletus hantavirus LX309 segment large, complete sequence.
XX
KW .
XX
OS Eothenomys miletus hantavirus LX309
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6538
RX PUBMED; 21402592.
RA Zhang Y., Yuan J., Yang X., Zhou J., Yang W., Peng C., Zhang H.L., Shi Z.;
RT "A novel hantavirus detected in Yunnan red-backed vole (Eothenomys miletus)
RT in China";
RL J. Gen. Virol. 92(Pt 6):1454-1457(2011).
XX
RN [2]
RP 1-6538
RA Zhang Y.-Z., Yuan J.-F., Yang X.-L., Zhou J.-H., Zhang W.-H., Zhang H.-L.,
RA Peng C., Shi Z.-L.;
RT ;
RL Submitted (13-OCT-2010) to the INSDC.
RL Wuhan Institute of Virology, Chinese Academy of Sciences, 44 Xiao Hong
RL Shan, Wuhan, Hubei 430071, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .6538
FT /organism="Eothenomys miletus hantavirus LX309"
FT /segment="large"
FT /host="Eothenomys miletus"
FT /isolate="LX309"
FT /mol_type="viral cRNA"
FT /country="China"
FT /isolation_source="lung"
FT /collection_date="2009"
FT /db_xref="taxon:943342"
FT CDS 38. .6502
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="ADW27360.1"
FT /translation="MEKYTDIRRRIRDLVPGNVSAVECLDLLDRLYAARHDVVDQMIKH
FT DWSDNKDREQPIGHVLLMAGVPNEVIRSMERKIIPGSASGQILKSFFKMTPDNYKITGK
FT LIEFVEVTVTADVAKGIREKTLKYQAGLDFIERLLRQEAEKGNIQEAFQIKFDVVAVRT
FT DGSNISTQWPSQRSEGVVQTMRMIQADINYVREHLIKNDERSTLEAMFNLKFHIGGPKT
FT RLFDVPDYRAQPLCEPNIQRLIDYCKEWLTLTHDFVFHEVKGSKVFSVFEEEEKAHVLN
FT YSKSRKPRNFLLVQTTIQGPYMPSTIASDQYDTKTGCFELLKGDVQTPLQRLVLDMAYK
FT YVTLDKEDLINFYSPKSHFHQTVSVKEPGTFKLNLSSLCPQSRGLLDMVSKNHEKGIFG
FT EVIDSIDISSQIDQNTSCKLIEKILSSLEVNVGETTYGVPQPKKSTGVDNMFQKFYENE
FT MHRYLINIVKKTAAWHIGHLIRDLSESLIAHAGLRRSKYWSIHGYSHGSCMLFILPSKS
FT LEVAGSFIRFITVFKDGIGLIDHDNLDSVLDIDGTQWCFSKLMSLDLNRLLSLNIAFEK
FT TLLATATWFQYYVEDQGHFPLQHALRSVFAYHLLLCVSQKMKVCALFDNLRYLIPSVTS
FT LYSGFVPLVKKLFERPFKSSLEVYIYVSIKTLLVSLAQNNKVRFYSKVRLMGLTVDQST
FT VGASGVYPSLMTRVVYKHYRSLISEATTCFFLFEKGLHGNLTEEAKIHLETVEWARKFK
FT EKEQKYGSYIIEEGYVIDEICNRTVEVEQQLFCQEVVELGAQELNHYLHAKSQVMASNI
FT MNKYWDKPYFSQTRNISLKGMSGSLQEDGHLQASVTLIEAIRFLNQSQNNPSLIEMYER
FT TRHHKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIAKVVPEEYISYGGER
FT KILNIQSALEKALRWASGESEIQSSLGQVIKFKRKLMYVSADATKWSPGDNSAKFRRFT
FT EALYDGLQDKKIKHCVVDALRNIFSTEFFMSRKLHKYIDDMPTLSDKVEDFVSFFPNKV
FT SAEVKGNWLQGNLNKCSSLFGVAISLLFKRVWNALYPELDCFFEFAHHSDDALFIYGYL
FT EPVDDGTDWYSYVSYQIQAGNLHWFAVNQEMWKSMFNLHEHILLMGSIRISPKKTTVSP
FT TNAEFLSTFFEGCAVSVPFVKILLGSLSDLPGLGYFDDLAAAQSRCVKAMDMGASPQLA
FT QLAVVLCTSKVERLYGTAAGMVNNPCAFLKTARENIPIPLGGDGSMSIMELSTAGIGMS
FT DKNVLKRAFYSYRHTKKESDKYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFTP
FT KSEFEFYDQYSSKYLHLWTEQHPXYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSPL
FT QLRFRMQAKQHMKVCRYDGEWITFREVLAAADSFATMYNPTPSDLELFNTLVSCTFSKE
FT YAWKDFLNEVRCEIINSRQVHRAKVARTFTVRERDQAIQNPITAVIGYKYAKTVDEVGD
FT VLDSSYFPDSLSTDLQVMRDGVYRELGLDISNPAVLKRIAPLLYKSGKSRVVIVQGNVE
FT GTAESICSYWLKSMSLIKTIKVRPKKEVLKAVSLYSQRENVGDQLNLAATRLCIEVWRW
FT CKVNEQDPHDWLKALYFEDKTLMEWVEKFRSKGVISVDPEIQCMALLLYDIKGYMGILQ
FT LQANRRAYSGKQYDAYCLQVYNEETKLYEGDLRVTFNFGLDCARLEVFWEKQEYILETS
FT ITQRHVLKIMMEEVTKELLRCGMRFKTEQVSHTRSLVLFKTESGFEWGKPNVPCIVYKN
FT CMLRTGLRTRQPINQEFLISVQANGFRALAQADEENPRFLLAHAYHTLKDIRYQALQAV
FT GNVWYKSAQHKLFINPIIASGLLENFMKGLPAAIPPAAYSLIMNRAKISVDLFMFNELL
FT ALINPSNILNLDGIEETSEGYSNVTSMSSSQWSEEVSLTLGDDDDDPDELSYTINLDDI
FT DFEKLDLEEDIEHFLQDESAYTGDLLIQTDEMEVKRMRGLIRILEPIRLIKSWVSKGLA
FT IDKVYNPVGIILMARYMSKHYDFSKTPLSLMNPYDLTEFESVVKGWGECVNDRFLDYDS
FT EAQRKVREEKLLPEDVLPDSLFSFRHVDILLKRLFSRDSVSSFY"
XX
SQ Sequence 6538 BP; 2128 A; 947 C; 1451 G; 2011 T; 1 other;
hq404253 Length: 6538 31-MAY-2011 Type: N Check: 1954 ..
1 tagtagtaga ctccgagata gagaagtcta ctacaaaatg gaaaagtata
51 cagatattcg aaggagaata agggaccttg tccctggtaa tgtatcagct
101 gtagagtgtt tggatttgtt ggataggttg tatgcagcca ggcatgatgt
151 ggttgaccag atgattaaac atgattggtc tgataataag gaccgagaac
201 agccaatagg tcatgtcctg cttatggcag gagtaccaaa tgaagtaata
251 cgatcaatgg agagaaaaat cataccagga agcgcatcag ggcagatttt
301 gaaatcattt tttaagatga caccagataa ttataaaatc acagggaagt
351 taattgagtt tgttgaagtt acagtcacag cagatgttgc aaaggggatt
401 agggaaaaga cattaaaata tcaagcaggg ctcgatttta tagagagatt
451 actgcgtcag gaggcagaaa aaggtaatat tcaagaagca tttcagatca
501 aattcgatgt ggttgcggtg agaactgatg gctctaacat ctcaacacaa
551 tggcccagcc agagaagtga aggtgttgtt cagaccatgc gaatgatcca
601 agcagatata aattatgtac gtgagcatct aataaagaat gatgagagaa
651 gtacgttaga ggccatgttt aatcttaaat ttcatattgg ggggcccaaa
701 actagattat ttgacgtgcc tgattaccgt gcacaacctt tatgtgaacc
751 taatattcaa aggctgatag attattgtaa ggaatggtta actctaaccc
801 atgactttgt ttttcatgaa gtaaagggct caaaagtctt ttctgtcttt
851 gaggaagaag agaaggctca tgtattgaac tatagtaaat caaggaaacc
901 acggaatttc ttattagttc agacaacaat acagggtcca tacatgccct
951 ctactattgc atctgatcag tatgatacta agactggctg ttttgagtta
1001 ttgaaaggtg acgttcaaac accacttcaa aggcttgtac tggatatggc
1051 atataaatat gtgactttgg ataaggagga cttaataaac ttttatagtc
1101 caaaatcaca ttttcaccaa acagtatcag tcaaagagcc agggactttt
1151 aagttaaact tatcaagttt atgcccacaa tctcggggac ttctagacat
1201 ggtgtcgaaa aatcatgaaa agggaatttt tggtgaggtt atagacagta
1251 tcgatatatc cagccagatt gatcagaata ctagttgtaa attaatcgaa
1301 aaaatattat caagcctaga ggttaatgtg ggggagacaa catatggagt
1351 gccacaacct aaaaagagca caggagttga taatatgttt cagaagtttt
1401 atgagaatga aatgcacagg tatttaataa acattgtgaa gaaaactgca
1451 gcttggcata taggtcattt aataagagac ttgagtgaaa gtcttattgc
1501 ccatgcaggt ttgaggagat caaaatactg gtctatacat ggatattctc
1551 atggtagctg tatgttattc atattgccat caaagtcatt ggaggttgca
1601 gggtcattta taagatttat cactgtcttt aaggatggaa ttggtttgat
1651 agaccatgat aatttggact ctgtacttga tatcgatggt acacagtggt
1701 gcttcagtaa attgatgagc ttagacctca ataggttact ttcattgaat
1751 attgcatttg aaaaaacact gttagcaaca gcaacatggt ttcagtatta
1801 tgtagaagat caagggcatt tcccattaca gcatgcttta agatctgtgt
1851 ttgcttatca tctgttatta tgtgtttctc agaagatgaa agtctgtgca
1901 ttgtttgata atctccgata tctgatacca tcggtcactt ctttgtattc
1951 aggttttgta cctttagtaa aaaaactgtt tgagaggccg tttaagagtt
2001 ccttagaagt atatatttat gtgagtatta aaacattatt agtcagcttg
2051 gcacagaaca ataaagttag gttttactct aaagttagac tgatgggttt
2101 aacagtagac caatccactg tgggagcgag tggtgtgtat ccttcattaa
2151 tgactagggt tgtttataag cattacagga gtttgatctc agaggcaacg
2201 acttgttttt ttctgtttga gaagggatta catggaaact taactgaaga
2251 ggcaaaaatc catttggaaa ctgttgagtg ggcaaggaag tttaaagaaa
2301 aggagcaaaa atatggcagt tatataatag aagaaggtta tgttattgat
2351 gagatttgca acaggactgt tgaagtagaa caacaattat tttgtcagga
2401 ggtagttgaa ttaggtgctc aagagttgaa tcattattta catgcaaagt
2451 cacaggtgat ggcatccaat attatgaaca agtactggga taaaccctat
2501 tttagccaga ctagaaacat tagcctgaaa gggatgtcag gttcactgca
2551 agaagatggt cacttacaag caagtgtgac tttaattgag gcaattcgat
2601 ttttaaatca atcacaaaat aatccgtcac taatagaaat gtatgaaaga
2651 actcgacacc ataaggcaca agcaaggata gttagaaaat atcaaagaac
2701 tgaagctgat cgtggttttt ttataacaac attaccgact cgtgttcgct
2751 tagaaataat agaagattat tatgatgcta ttgcaaaagt tgttccagaa
2801 gaatatatct catatggtgg agaacggaaa atattaaaca tacagtctgc
2851 acttgagaag gcattgagat gggcttcagg tgagagtgag atccaatcta
2901 gtctaggtca agttataaag ttcaaaagaa aactcatgta tgtgagtgca
2951 gatgcgacaa aatggtcacc tggtgataat tcagcaaaat ttcgtaggtt
3001 cacagaggct ttatatgatg gattgcaaga taagaaaatt aagcattgtg
3051 ttgttgatgc cttacggaac atttttagta ctgaattttt tatgtcacga
3101 aagcttcata agtatataga tgatatgcca acactgtctg acaaggtaga
3151 agactttgtt agcttttttc caaataaagt ttcagctgaa gtgaagggta
3201 attggctaca aggaaacttg aacaaatgtt catcattatt tggggtagcg
3251 atttccttat tatttaaacg agtatggaat gctttatatc ctgagttaga
3301 ttgctttttc gagtttgcgc atcactcaga tgatgcatta tttatttatg
3351 ggtatttaga gcctgttgat gatggtacag attggtattc atatgtgtct
3401 tatcaaatcc aagcaggtaa tctacactgg tttgcagtca accaagaaat
3451 gtggaaaagt atgtttaatt tgcatgaaca catattatta atgggttcaa
3501 ttagaatttc accaaagaaa acaacagtat caccgactaa tgccgaattt
3551 ttgtctactt tttttgaggg ttgtgcagta tcagttccat ttgtcaagat
3601 tttattaggt tcattgtctg atttacctgg tttaggttat tttgatgatc
3651 tagctgcggc tcaaagtagg tgtgtgaaag ctatggatat gggagcatcc
3701 ccacagttgg cacaattggc tgtggttttg tgcactagta aggtagaacg
3751 attgtatggc actgctgcgg gaatggtaaa caacccttgt gcttttttga
3801 agacagctcg tgaaaatata cctattccgt taggtggtga tgggtctatg
3851 tcaataatgg aattaagcac tgcgggtata gggatgtctg ataagaatgt
3901 gttaaagagg gctttctatt cttataggca cactaaaaaa gaatcagaca
3951 aatatgttct aggtctcttt aagtttttaa tgagtttgtc agaagatgtg
4001 tttcaacatg acagattagg agagtttagt tttgttggaa aagtacaatg
4051 gaaggttttc acaccaaagt ctgagtttga attctatgat caatattcgt
4101 caaaatacct acatttatgg actgaacagc atcctgwtta tgattatata
4151 attcctcgtg gtcgagataa cttattggtg tatttggtac gtaagttaaa
4201 tgaccccagt atagtaacag ctatgacaat gcagtcacct ttgcaactaa
4251 gattcagaat gcaggcaaaa cagcatatga aagtttgtcg ctatgatgga
4301 gaatggatta catttagaga agtcttggca gcagcagatt catttgcaac
4351 tatgtacaat cctacaccaa gtgatcttga attatttaat actctggtaa
4401 gttgtacttt ttcaaaagag tatgcatgga aagatttttt gaatgaggtt
4451 aggtgtgaga ttatcaactc acgacaagtg catagagcaa aagtggccag
4501 aacattcaca gtaagggaac gggatcaagc aatccaaaac cccataacag
4551 cagtgatagg ttacaaatat gctaaaactg tggatgaagt aggggatgta
4601 ttagacagtt cctatttccc tgattcatta tcaactgatt tgcaggtgat
4651 gagagatggt gtgtatagag aattaggcct tgatattagt aatcctgctg
4701 tgttaaaaag aattgctcct ttactttata agagtgggaa gtcacgtgtg
4751 gtcattgttc aagggaatgt ggaggggact gctgaatcta tctgtagtta
4801 ctggttaaag agtatgtcat taataaagac tataaaggta agaccaaaaa
4851 aagaagtgtt aaaggcagtt tctctgtatt cacaaagaga aaatgtaggt
4901 gaccagttaa atcttgctgc tacacgtctc tgtattgaag tctggagatg
4951 gtgtaaagtg aatgagcagg atcctcatga ctggctaaaa gcattatatt
5001 ttgaggacaa aacactgatg gagtgggtgg agaaatttag atcaaaaggt
5051 gttatatcag ttgatcctga aatacagtgt atggccttgt tgttgtatga
5101 tattaaagga tatatgggga ttttacagct ccaagcaaat agaagggcat
5151 actcaggaaa acaatatgat gcttattgtc tccaagtata caatgaagaa
5201 actaaacttt atgagggaga tcttagagtt acatttaatt tcggactaga
5251 ttgtgctcgt ttagaagtgt tttgggagaa gcaggagtac atcttagaaa
5301 catcaatcac acagcgccat gttctaaaaa taatgatgga agaggtcaca
5351 aaggagttat taagatgtgg gatgagattt aagacagaac aagttagcca
5401 cacacgcagt ttagttctgt ttaagactga atcaggtttt gagtggggta
5451 agcctaatgt accttgtatt gtatataaga attgcatgtt aagaactggt
5501 ctccgcacaa ggcagccaat aaaccaggaa tttttaatct cagtccaagc
5551 taatggcttt cgagcattgg cacaagctga tgaagagaat ccgcggtttt
5601 tgcttgcaca tgcatatcat actttgaagg atataaggta tcaagcatta
5651 caagctgttg ggaatgtatg gtataagtct gctcaacaca aactatttat
5701 aaatcctata attgcctcag ggcttttaga gaacttcatg aagggattac
5751 cagcagcaat accaccagca gcctattcat taataatgaa tcgagcaaag
5801 atctctgttg atttatttat gttcaatgaa ttgcttgcgt taattaatcc
5851 tagtaatatt ttgaacttag atggcataga agagacttca gagggttata
5901 gcaatgtgac ttcaatgtct agtagtcaat ggtcagaaga ggttagtttg
5951 acattaggag atgatgatga tgatcctgat gaattaagtt atacaatcaa
6001 tctcgatgat atagactttg agaaattgga cttagaggaa gatatagagc
6051 attttctcca agatgagtct gcatatactg gagacttgct tatccagact
6101 gatgaaatgg aagtcaaaag gatgagaggg ttaatacgaa tacttgaacc
6151 tattaggttg ataaagagtt gggtgtcgaa aggacttgct attgataaag
6201 tatacaatcc agtcgggatt attttgatgg ctcgttatat gtcaaaacac
6251 tatgattttt ctaagactcc actgtcattg atgaaccctt atgacttaac
6301 tgagtttgaa agtgttgtta aaggatgggg tgaatgtgtc aatgacaggt
6351 ttttagatta tgatagtgaa gcacaaagga aagtaaggga agaaaaatta
6401 ttgccagaag atgtccttcc tgattcttta ttttctttta ggcatgttga
6451 tattcttctt aagagacttt tttcaaggga ttcagtttcc tccttttatt
6501 gatttctttt tttgctcttt tctcggagca tactacta