Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate Geo-Tif2R nucleocapsid protein (N) gene, complete cds.

ACC No: HQ406912

Dated: 2011-04-19 | Length: 777 | CRC: -1820178608

                
ID   HQ406912; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
XX
AC   HQ406912;
XX
DT   19-APR-2011 (Rel. 108, Created)
DT   19-APR-2011 (Rel. 108, Last updated, Version 1)
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DE   Tomato spotted wilt virus isolate Geo-Tif2R nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-777
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Beasley J.P., Pappu H.R.;
RT   "Variation in Tomato spotted wilt virus (TSWV) isolates from resistant and
RT   susceptible peanut cultivars in Georgia";
RL   Unpublished.
XX
RN   [2]
RP   1-777
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Beasley J.P., Pappu H.R.;
RT   ;
RL   Submitted (15-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL   Department of Entomology, University of Georgia, 122 S. Entomology Drive,
RL   Tifton, GA 31793, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .777
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Arachis hypogaea cultivar Georganic"
FT                   /isolate="Geo-Tif2R"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="07-Jul-2010"
FT                   /proviral
FT                   /PCR_primers="fwd_name: CN223, fwd_seq: atgtctaaggttaagctc,
FT                   rev_name: CN224, rev_seq: ttaagcaagttctgtgag"
FT                   /db_xref="taxon:11613"
FT   gene            1. .777
FT                   /gene="N"
FT   CDS             1. .777
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AEB54717.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSC
FT                   NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ   Sequence 777 BP; 254 A; 135 C; 173 G; 215 T; 0 other;

hq406912 Length: 777  19-APR-2011  Type: N  Check: 61  ..

       1  atgtctaagg ttaagctcac taaggaaagc attgtcgctt tgttgacaca
      51  aggcaaagac cttgaatttg aggaagatca gaatctggta gcattcaact
     101  tcaagacttt ttgtctggaa aaccttgacc agatcaaaaa gatgagcatt
     151  atttcatgtc tgacattcct gaagaaccgt cagagcataa tgaaggttat
     201  caagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgat atgaccttca gaaggcttga tagcttgatt
     301  agggtcaggc ttgttgagga aactgggaat tctgagaatc tcaatactat
     351  caaatctaag attgcttccc accctttgat tcaagcctac ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctagg aggtagctta
     451  cctcttattg cttcagttga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaggacct cgggattgac ccaaagaagt
     551  atgacaccag ggaagcctta gggaaagttt gcactgtgct gaaaagcaaa
     601  gcatttgaaa tgactgaaga tcaggtgaag aaggggaaag agtatgctgc
     651  tatactcagt tcctgcaatc ctaatgctaa aggaagtgtt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg agttaaaaaa
     751  caggcaaaac tcacagaact tgcttaa