Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus isolate AP4-CofR nucleocapsid protein (N) gene, complete cds.

ACC No: HQ406956

Dated: 2011-04-19 | Length: 777 | CRC: 1440936745

                
ID   HQ406956; SV 1; linear; genomic RNA; STD; VRL; 777 BP.
XX
AC   HQ406956;
XX
DT   19-APR-2011 (Rel. 108, Created)
DT   19-APR-2011 (Rel. 108, Last updated, Version 1)
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DE   Tomato spotted wilt virus isolate AP4-CofR nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-777
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Beasley J.P., Pappu H.R.;
RT   "Variation in Tomato spotted wilt virus (TSWV) isolates from resistant and
RT   susceptible peanut cultivars in Georgia";
RL   Unpublished.
XX
RN   [2]
RP   1-777
RA   Sundaraj S., Srinivasan R., Culbreath A.K., Beasley J.P., Pappu H.R.;
RT   ;
RL   Submitted (15-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL   Department of Entomology, University of Georgia, 122 S. Entomology Drive,
RL   Tifton, GA 31793, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .777
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Arachis hypogaea cultivar AP-4"
FT                   /isolate="AP4-CofR"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="06-Aug-2010"
FT                   /proviral
FT                   /PCR_primers="fwd_name: CN223, fwd_seq: atgtctaaggttaagctc,
FT                   rev_name: CN224, rev_seq: ttaagcaagttctgtgag"
FT                   /db_xref="taxon:11613"
FT   gene            1. .777
FT                   /gene="N"
FT   CDS             1. .777
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AEB54761.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKIFCLENLDQI
FT                   KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSC
FT                   NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA"
XX
SQ   Sequence 777 BP; 251 A; 133 C; 176 G; 217 T; 0 other;

hq406956 Length: 777  19-APR-2011  Type: N  Check: 2073  ..

       1  atgtctaagg ttaagctcac taaggaaagc attgtcgctt tgttgacaca
      51  aggcaaagac cttgagtttg aggaagatca gaatctggta gcattcaact
     101  tcaagatttt ttgtctggaa aaccttgacc agatcaaaaa gatgagcatt
     151  atttcatgtc tgacattcct gaagaatcgt cagagcataa tgaaggttat
     201  caagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatt
     301  agggtcaggc ttgttgagga aactgggaat tctgagaatc tcaatactat
     351  caaatctaag attgcttccc accctctgat tcaagcctat ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctagg aggtagttta
     451  cctcttattg cttcagttga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaggacct cgggattgac ccaaagaagt
     551  atgacaccag ggaagcctta gggaaagttt gcactgtgct gaaaagcaaa
     601  gcatttgaaa tgactgaaga tcaggtgaag aaggggaaag agtatgctgc
     651  tatactcagt tcctgcaatc ctaatgctaa gggaagtgtt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg ggttaaaaaa
     751  caggcaaaac tcacagaact tgcttaa