Sequence of DPV Dahlia mosaic virus

Dahlia mosaic virus D10 inclusion body protein gene, complete cds.

ACC No: HQ416678

Dated: 2011-11-15 | Length: 1464 | CRC: 907696476

                
ID   HQ416678; SV 1; linear; genomic DNA; STD; VRL; 1464 BP.
XX
AC   HQ416678;
XX
DT   19-APR-2011 (Rel. 108, Created)
DT   15-NOV-2011 (Rel. 110, Last updated, Version 3)
XX
DE   Dahlia mosaic virus D10 inclusion body protein gene, complete cds.
XX
KW   .
XX
OS   Dahlia mosaic virus D10
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus.
XX
RN   [1]
RP   1-1464
RX   PUBMED; 21837417.
RA   Eid S., Almeyda C.V., Saar D.E., Druffel K.L., Pappu H.R.;
RT   "Genomic characterization of pararetroviral sequences in wild Dahlia spp.
RT   in natural habitats";
RL   Arch. Virol. 156(11):2079-2084(2011).
XX
RN   [2]
RP   1-1464
RA   Eid S., Almeyda C., Saar D., Druffel K., Pappu H.;
RT   ;
RL   Submitted (18-OCT-2010) to the INSDC.
RL   Plant Pathology, Washington State University, 100 Dairy Rd, Pullman, WA
RL   99164, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1464
FT                   /organism="Dahlia mosaic virus D10"
FT                   /host="Dahlia tenuicaulis"
FT                   /isolate="D10"
FT                   /mol_type="genomic DNA"
FT                   /country="Mexico"
FT                   /collection_date="Aug-2006"
FT                   /db_xref="taxon:1006328"
FT   CDS             1. .1464
FT                   /codon_start=1
FT                   /product="inclusion body protein"
FT                   /note="ORF6"
FT                   /db_xref="InterPro:IPR009027"
FT                   /db_xref="InterPro:IPR011320"
FT                   /db_xref="UniProtKB/TrEMBL:F5A7G1"
FT                   /protein_id="AEB54985.1"
FT                   /translation="MEEIKALRLKEKILLIELKAIQQKIALYDESLDTTVNSVQETARL
FT                   QTESIPCQTAKGKEQSSPLIPDALGKSMKNALGKSMKLSNDEPQSSSSPAANGSGKDST
FT                   NPLMADSLPKTEKVVLRPTYSQIMQEPMKSKSRFYVIFDGEHRGIYEDWSIVSRYVTGT
FT                   SCPFKKFGSLLQAQQEATRYSAEFGKKEIPLRITVFSEPLKPKKKERMVEFKKDFLKNI
FT                   KEAKEEEEDNIIISLDEFRLVWSKARLLSHLDFESEHIYTEDKATKSLIIFCPGASPEL
FT                   VSLAFYAGLTKYIYPSANLLEISLLSEGMKKAIKNFRRKIADARDANIFIKCNSTLPDW
FT                   YQGRSFPSYHHLEIGIAKTRTVEPSKEMAEKYEDPENWVEIRSRGLLKILSNLQKITAG
FT                   SFVKVNYCSSHCIITSHSGSPIPKHEKELLTIMERRILLNETEVGPTTKEKLCQKLQRI
FT                   IEDHQCAHCKASSTEETSLSKDYFMGEDK"
XX
SQ   Sequence 1464 BP; 548 A; 273 C; 270 G; 373 T; 0 other;

hq416678 Length: 1464  15-NOV-2011  Type: N  Check: 950  ..

       1  atggaagaaa taaaggcttt acgcctaaaa gaaaaaattc ttttaataga
      51  attaaaagct attcaacaaa aaatagctct ctacgacgaa agtctagata
     101  caactgttaa ttcagtacag gaaaccgcga ggttacaaac tgaatctatt
     151  ccctgtcaaa cggcaaaggg taaagaacaa tcaagtccgt tgatccctga
     201  tgctttggga aaaagcatga aaaatgcttt gggaaaaagc atgaaattgt
     251  caaatgatga accacaatca tcatctagtc cagcagcaaa cggctctggt
     301  aaagactcaa caaatccgtt gatggctgac agtttgccaa aaactgaaaa
     351  ggtcgttctt agaccaactt attctcaaat catgcaggaa cccatgaaat
     401  ctaaatcaag attttatgtg atctttgatg gagaacacag aggcatttat
     451  gaagactggt caatagtctc cagatatgtc acaggaacgt cttgtccgtt
     501  caagaaattt gggtccttgt tacaagccca acaagaagct actcgttact
     551  cagcagagtt cgggaaaaaa gaaataccac ttaggatcac ggttttctct
     601  gaaccactaa agcctaagaa aaaagaaaga atggtagaat ttaaaaaaga
     651  cttcttaaaa aatattaaag aagccaaaga agaagaagaa gataatatta
     701  ttatctcttt agacgaattc agactagttt ggtcaaaagc cagattatta
     751  agtcatctcg actttgagtc tgaacacata tacacagaag ataaagctac
     801  taaaagtctt attatctttt gtccaggtgc aagtccggaa ttagtttctc
     851  tagcatttta tgctggttta actaaatata tatatccttc tgctaatcta
     901  cttgaaatta gcctgttatc cgaaggaatg aagaaagcca ttaaaaactt
     951  tcgaagaaag attgctgatg ctagagatgc aaatattttc attaaatgca
    1001  actctactct accagattgg taccaaggaa gatcatttcc aagctaccac
    1051  catttggaga ttggcatcgc caaaacaaga acagtcgaac cttctaagga
    1101  aatggctgaa aaatatgaag accctgaaaa ttgggttgaa ataaggtcac
    1151  gaggattgtt gaagattctc agcaacctac aaaaaataac agctggaagc
    1201  tttgttaaag taaattactg cagctctcac tgcataatta ccagccacag
    1251  tggatctcct attcctaaac acgaaaagga gttactgaca ataatggagc
    1301  ggcgaattct tctcaatgag acagaagttg gccctaccac caaagaaaaa
    1351  ctttgccaaa agttgcagag aataattgaa gaccatcagt gcgctcactg
    1401  taaagcatct tcaacagaag aaacgtctct atccaaagac tactttatgg
    1451  gagaagacaa atga