Sequence of DPV Ranunculus latent virus
Ranunculus latent virus isolate Cy-42 polyprotein gene, partial cds.
ACC No: HQ449546
Dated: 2011-06-01 | Length: 5929 | CRC: -2120581371
ID HQ449546; SV 1; linear; genomic RNA; STD; VRL; 5929 BP.
XX
AC HQ449546;
XX
DT 13-DEC-2010 (Rel. 107, Created)
DT 01-JUN-2011 (Rel. 109, Last updated, Version 3)
XX
DE Ranunculus latent virus isolate Cy-42 polyprotein gene, partial cds.
XX
KW .
XX
OS Ranunculus latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Macluravirus.
XX
RN [1]
RP 1-5929
RX PUBMED; 21340739.
RA Ciuffo M., Testa M., Lenzi R., Turina M.;
RT "Ranunculus latent virus: a strain of artichoke latent virus or a new
RT macluravirus infecting artichoke?";
RL Arch. Virol. 156(6):1053-1057(2011).
XX
RN [2]
RP 1-5929
RA Ciuffo M., Turina M.;
RT ;
RL Submitted (28-OCT-2010) to the INSDC.
RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .5929
FT /organism="Ranunculus latent virus"
FT /host="artichoke"
FT /isolate="Cy-42"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /collection_date="2005"
FT /db_xref="taxon:341113"
FT CDS <1. .5670
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains CI, 6K2, NIa, NIb, and CP"
FT /db_xref="GOA:E5LLA6"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR001650"
FT /db_xref="InterPro:IPR001730"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="InterPro:IPR013648"
FT /db_xref="InterPro:IPR014001"
FT /db_xref="UniProtKB/TrEMBL:E5LLA6"
FT /protein_id="ADR74229.1"
FT /translation="THSSDHAKCCKCPLTFSWKSVFYKHEGKEQMGDMSIQVMTYGSAF
FT FRSVHNPTFLDDFDAVFLDESHLITPHSLALESLLNKHTRVRKFYLSATPRNGISCDDV
FT ARRFQIYEHTVEKCSVDEFIAQLDKGTATDPMKYGDKVLVFLAGKSECDKAASKVMSTN
FT LGIKALSLHKSNFKSNYTKVMSSVDGGERVIVFATNILETGVTLNVDVVVDFGFTNSPV
FT LDLTGKTFLLERRRVTQAERKQRIGRAGRLRDGHAIVVGKVGRTEELVSADVVYEAALI
FT SFVYNIDIYINSHFDHVWIGNVTRQQAKTMINFRLPSFAMKDVVFPDGSVRDEFLKAVK
FT DRTNRSANIKTLQGCTINPVYEGWPVLGTYAQKFGIAFEDSRYNALSKMRVPFIFHDMN
FT ELDIEAYAEAAASYRPSVLTRWAKPAKEVSNVILHVNQRNVCEAIGVVRSLIASTKSLI
FT QSKKHNQNLHRESPLACLFTKRTTLELESKLGEQIKLGERNLVKLTKLLGNLELFMNLD
FT EMKDEEPELSSGDMEEIGRVLELQMQTTCNEDHIATVLHLEELPSTTFREAIVIGRKRV
FT ACALVLMCIAAFGGLAWYYLWDDDTGLDNKWNKKNKKAVLKDVLEMKGKSFNRDKRSAT
FT AYEKILKDSYEGEDNYNLDEFRTRRKGRVDADKTPFENLMTKAAPFITMYDITSDENVV
FT NAVFMDHNKQAFYETADPLKNMGEVKKHLEQMKSKQPVFKWGDEADDDVFCDVTTRDGT
FT TIRVRLTPHNSQRLTSTHGVQGYAQNEGRYRQTGDAEVLKMPTQHLEVNTRLADNMVNL
FT DVGNMIGLVSVKGGNANCLLYKDWIIMPAHVMMCSLPVTLTFKHYTVTLSTMPECYSFV
FT GFDLLAIKRPSTLAPVRCSATLESAKSGMTVQMLYKKPVVNKTLMTVTDVAYKTKEHRW
FT EHQIPTVYGMCGAPMLDVSSGKIVGIHILGDTARKCNTFEGFPPDMLKLVNSNDPKVRN
FT LFVRERVKAWEFVPEMHGHDSARIKNLQIDTIEFKQFTRDVSVYTVENLTRSATAGGLF
FT KPREVTEKRSLPPTVSAIHMQNLAYSNGLLNTRHIFEGENPYWKQFKLCNEWVEPIVEK
FT YEDNYMPSALNREAYWKDLLKYNRPQHLIKVDDVALKSSVVQLVRELERAGMTKTKIRT
FT VDQVLEDIQWGKAAGPLYGMKKKELCKNLTMEELTSLALHCRSELNKGKNAGLWNGSLK
FT AELRPKIKVEANKTRVFTAAPITTLIGSKFFVDDFNKQFYASHLKAPHTVGINKFSNGW
FT AKVHEKLNRKGWLHGSGDGSRFDSSIDPFLFDMIYTIRCHFMCDDDKREATRAMSNMFR
FT EFVFTPIHTISGNILVKNVGNNSGQPSTVVDNTLVLMLSFYYAYAVKTKDYAFDHIDDR
FT FVFVCNGDDNKFAVSPAFVKEFGGIFTDEIAQLGLNYEFDTLTHDITANPYMSLTMISV
FT CGRIGFQLNPERILGIVQWIKKGGVVHASQAAFAAMIESFNDPDLFSVMHSYLIWLLVT
FT YRQELRYAMHNDLVSVVYMDPAQVFALHYNDEADHHAWFDEDSIESSSDDDEDDVQTQE
FT LQMNREEIEAAAKKEQEDKAAAAKKESEEKEAEERARKGKGSIPGPNVTSSSADTSPEK
FT GNEDVSEPQGDPEEKEDDVKWVMPALNPNRGGAVIPTINGKKLWRRGILKHVPKQQYDT
FT TTTKATQTQLTNWVEAVKKDLRLKDDNAWALVLTVWCIWCADNGTSPEVDTDQELEIHD
FT GLGKVQAVKIDTFVDPALENGGLRKIMRHFSGITQEILAKGGRMSAYGIKRGFTDKIMI
FT PYAFDFMVADKRTPKAVREQLAQAKIAAIGQGIRRSMITDGGVKGSRVSHERHTDQDQD
FT EFEHGHDFDRRPHLT"
XX
SQ Sequence 5929 BP; 1780 A; 1264 C; 1477 G; 1408 T; 0 other;
hq449546 Length: 5929 01-JUN-2011 Type: N Check: 1380 ..
1 acccactcaa gcgaccacgc aaaatgttgc aaatgccctc tcacattttc
51 atggaaatct gttttctaca aacacgaagg gaaggaacaa atgggcgaca
101 tgagcattca ggtgatgacg tacggatcag ctttctttcg tagcgttcac
151 aacccaacct ttctcgatga ttttgatgcg gttttccttg atgagtccca
201 tctaatcaca ccccattcgt tggcgctgga atcattattg aataagcata
251 cgagggtgag aaagttttat ttgtcggcaa caccaaggaa tggcatctcg
301 tgtgatgatg ttgcccggag atttcagatc tacgaacata cggttgagaa
351 gtgcagtgtg gatgagttca tagcacaact agacaaggga acagcaacag
401 atccaatgaa atatggtgat aaggtgcttg tttttctcgc tggaaagagt
451 gaatgtgata aggccgcgag taaagtcatg agcacgaact taggcatcaa
501 agctttatcg ttacacaaga gcaacttcaa atctaattat acaaaagtca
551 tgagtagcgt cgatggtggc gaacgcgtga ttgtgttcgc aacaaacatt
601 ttggagactg gcgtaacctt aaatgtggat gtggttgttg attttggctt
651 cacgaacagt ccagttctcg acctcactgg aaaaactttc cttttggagc
701 gaagacgagt aacgcaagct gagagaaagc aacgaatcgg tcgagcaggg
751 agattgcgag atggtcacgc aattgttgtt ggcaaagttg ggcgaactga
801 agagctcgtc tcagcagatg tagtttatga agcagctttg atatcatttg
851 tttacaacat cgacatctat atcaacagcc acttcgatca tgtgtggata
901 ggaaacgtca caaggcaaca agcaaaaacg atgattaatt tcagactacc
951 atcttttgcc atgaaggatg ttgttttccc tgacggcagc gtgcgcgatg
1001 aatttttgaa ggccgtgaaa gatcgcacca ataggagcgc aaacatcaag
1051 actctgcaag ggtgtactat caaccctgtg tatgaaggtt ggcccgtgtt
1101 gggaacgtac gcgcagaaat ttggcatcgc gtttgaggac tcccgctaca
1151 acgccctctc gaaaatgcgt gttccattca ttttccatga tatgaacgaa
1201 ctcgacattg aagcttatgc tgaggccgct gcatcataca ggcctagcgt
1251 cctaacccga tgggcaaagc cagcaaaaga agtttccaac gttatattgc
1301 atgtcaacca gaggaatgtt tgcgaagcca tcggagttgt gcgatccctg
1351 atagcgagca caaagagttt gattcagagc aagaagcata accaaaactt
1401 acatcgcgag tcccccctag cgtgcttgtt cacgaagcga accacacttg
1451 agctggaatc caagcttggt gagcaaataa agcttggtga gcgtaacctt
1501 gtgaagttaa ctaagctgct tggaaacttg gaactcttca tgaatcttga
1551 tgagatgaag gatgaggagc ccgagctaag ctcaggggac atggaggaga
1601 ttggtagggt tctcgaatta cagatgcaaa caacatgcaa tgaggatcac
1651 attgccacgg ttctccacct agaggagcta ccaagcacga cgttccgaga
1701 agcaatcgtg attgggcgaa aacgtgtcgc ttgcgcactt gttcttatgt
1751 gcatagctgc ttttgggggc cttgcttggt actacttatg ggacgacgac
1801 acagggcttg ataataaatg gaataagaaa aataagaaag cagtgctcaa
1851 ggacgttctg gaaatgaaag ggaaatcctt taacagggac aaaaggagtg
1901 caactgctta cgagaagatt ctcaaggata gctacgaggg tgaagataat
1951 tacaaccttg atgaatttcg cactcggagg aagggacgtg tggacgcaga
2001 caaaacacca ttcgagaatc tgatgaccaa ggcagcgccg ttcatcacca
2051 tgtacgatat cacgtcagat gagaatgttg ttaatgccgt ctttatggat
2101 cacaacaaac aagcattcta tgaaactgct gaccctctca aaaatatggg
2151 agaagtgaag aagcaccttg agcagatgaa atccaagcaa ccagttttca
2201 aatggggaga tgaagctgac gatgatgtct tctgcgatgt cacaacaagg
2251 gacgggacaa caattcgcgt gagattgaca ccacacaact cccaaaggtt
2301 gacatcaaca catggtgttc aaggatatgc gcagaatgaa ggaaggtatc
2351 ggcaaactgg tgacgctgag gtgctcaaaa tgccaacaca gcacctagaa
2401 gttaacacga ggttggccga caacatggtc aacttagatg ttggcaacat
2451 gataggtctt gttagtgtaa aaggtggtaa tgcaaactgt ttgctgtata
2501 aagattggat tataatgccc gcccatgtga tgatgtgctc attgcctgta
2551 accctcactt ttaagcacta cactgtaacg ctatcaacaa tgccagagtg
2601 ttatagtttt gtcggtttcg atcttttggc aatcaaacga ccaagcacgc
2651 tcgcacccgt aagatgttct gcaacgcttg aatcagccaa gagcgggatg
2701 acagtgcaaa tgctatacaa gaaacccgtt gtcaacaaaa cactgatgac
2751 ggtaacggac gtggcttata agaccaagga acataggtgg gagcaccaaa
2801 ttcctactgt atatggaatg tgtggagcac ccatgctcga cgtttcatca
2851 gggaaaatcg ttggcataca cattctcggg gacacggcac gaaaatgcaa
2901 cacttttgag ggctttcctc ctgatatgtt gaaattagtg aactccaacg
2951 atcctaaggt tcgcaacttg ttcgttaggg agcgcgtcaa agcatgggag
3001 ttcgttcccg aaatgcatgg tcatgattcc gcacgtatca aaaacctgca
3051 aattgacaca attgagttta agcaattcac acgcgacgtt agcgtctaca
3101 cagtggagaa cttgactaga agcgcaacgg caggtggttt gtttaagcca
3151 cgagaggtaa cggaaaagcg cagcttgcca ccaacagtgt cggccataca
3201 catgcagaat ctcgcctact ccaatgggtt gttaaacacg aggcacatct
3251 ttgagggcga aaacccctat tggaaacaat tcaagttatg taatgaatgg
3301 gttgagccca tcgtggagaa gtatgaggac aactacatgc cgagtgcatt
3351 gaatcgcgaa gcttactgga aggatttgct aaaatacaac aggccgcagc
3401 atcttatcaa agttgatgat gtcgcactaa agtcgtctgt agttcaatta
3451 gttcgcgaac tcgagcgagc tgggatgaca aaaacgaaaa taagaacagt
3501 ggatcaggtt cttgaagaca ttcagtgggg aaaagctgcg ggcccgctgt
3551 atgggatgaa gaagaaggaa ctatgcaaga acctcacgat ggaggaacta
3601 acctcgctcg cactacactg tcggagtgag ttgaacaagg gcaagaacgc
3651 tggactatgg aatggatcac tcaaagctga acttaggcct aaaatcaagg
3701 ttgaggcaaa caagacacgc gtcttcacag ctgcacccat aacgacgctg
3751 attggttcca aatttttcgt cgatgatttt aacaagcagt tctatgcatc
3801 ccatctgaaa gctccacata cagttgggat caacaagttt agcaacggat
3851 gggcaaaagt acatgagaag cttaacagaa aaggatggct tcatgggagt
3901 ggagacggct cacggtttga ttcatccatc gatcctttcc tctttgatat
3951 gatctacacc atccgatgtc actttatgtg cgatgatgac aagagggaag
4001 cgacacgagc tatgtccaat atgtttcgcg aattcgtgtt cacaccaata
4051 cacacaatca gtggcaacat cttggtgaag aatgtcggga acaacagtgg
4101 gcaaccaagc acagtcgttg acaacaccct cgtgctgatg ttatcgttct
4151 actacgcata cgctgtgaaa acgaaagatt atgcgttcga tcacattgat
4201 gatcgtttcg tgtttgtgtg taatggggat gataacaaat ttgcagtttc
4251 accagcattt gtgaaggagt ttggcgggat ttttacggac gaaattgcac
4301 agcttggatt aaactacgag tttgacacac tcacacatga catcacagct
4351 aacccataca tgagcttaac gatgatatca gtctgcgggc gtattggatt
4401 ccaattaaac cccgagcgaa tcttgggaat agttcaatgg attaagaaag
4451 gaggtgtggt tcatgcatcc caagctgcat tcgctgcaat gattgagtcc
4501 ttcaatgatc ctgacttgtt cagcgtcatg cattcctacc tcatctggtt
4551 actcgtgacg taccgccagg aacttagata cgcaatgcac aatgatcttg
4601 tctctgttgt ttacatggat ccagcccaag tattcgccct tcactacaat
4651 gacgaagcag atcatcacgc ttggtttgac gaagattcca tcgaatcatc
4701 aagcgatgat gacgaggatg acgtgcagac gcaggagctt cagatgaacc
4751 gagaagagat agaagctgct gcgaagaagg agcaagaaga taaggctgca
4801 gccgcgaaga aagaatctga agaaaaggaa gctgaggaga gggcccgaaa
4851 agggaaggga agtatccctg gcccaaatgt gacatcaagt tcagccgaca
4901 catcccctga gaaaggaaac gaagacgttt ctgagccaca aggtgatcca
4951 gaggagaagg aggatgatgt gaagtgggtg atgccagccc tcaatccaaa
5001 ccgtggcggc gctgtcatcc caacaatcaa tgggaagaaa ctctggagga
5051 gggggatctt gaaacacgtc ccaaagcaac aatatgatac aaccaccact
5101 aaggcgacac aaacacaact cacgaactgg gtggaagccg tcaagaagga
5151 cttacgtctc aaggacgaca atgcatgggc attggtcctt acagtgtggt
5201 gtatctggtg cgccgacaac ggaacatccc ccgaggttga tacggaccaa
5251 gagctagaga tccacgatgg tttaggaaag gttcaagctg tgaagatcga
5301 cacgtttgtt gatccagcgc tagagaatgg tggcctaagg aaaatcatgc
5351 gccacttctc tggtattaca caggaaatct tagcaaaagg aggtcggatg
5401 tcagcttacg gcatcaagag gggtttcacc gataagatta tgatccccta
5451 tgcttttgat ttcatggttg ctgacaaacg aacgcccaaa gctgtgcgag
5501 agcagcttgc tcaagctaag attgccgcaa ttgggcaagg catcaggcgt
5551 agcatgataa cggatggtgg tgtcaagggg agcagagtca gtcacgaacg
5601 tcacaccgac caggaccagg acgaatttga gcatgggcac gatttcgatc
5651 gacgccctca tcttacgtag atattaagtt attttgatag cagtcaactt
5701 aatttaagtt ctttattgct ttcctttatt ttcgcacttt aaggttcaaa
5751 tgggggtttg tgtcacggtt cctccaccga cctgacgtga cgagtgcact
5801 gtctatgttt taaataaatc ccgcttaatc ctctctggat gcttagggat
5851 ctgcattgtc taggcctgat ctggatggtc ggccgcactt tagtgaatcc
5901 tattcccaaa aaaaaaaaaa aaaaaaaaa