Sequence of DPV Plum pox virus

Plum pox virus strain Rec isolate Niksic 5 polyprotein gene, partial cds.

ACC No: HQ452358

Dated: 2013-05-07 | Length: 1396 | CRC: -706169671

                
ID   HQ452358; SV 1; linear; genomic RNA; STD; VRL; 1396 BP.
XX
AC   HQ452358;
XX
DT   07-MAY-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Plum pox virus strain Rec isolate Niksic 5 polyprotein gene, partial cds.
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1396
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   "Plum pox virus isolates from Montenegro";
RL   Unpublished.
XX
RN   [2]
RP   1-1396
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   ;
RL   Submitted (28-OCT-2010) to the INSDC.
RL   Plant Protection Department, Kmetijski institut Slovenije (Agricultural
RL   Institute of Slovenia), Hacquetova ulica 17, Ljubljana SI-1000, Slovenia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1396
FT                   /organism="Plum pox virus"
FT                   /host="plum"
FT                   /strain="Rec"
FT                   /isolate="Niksic 5"
FT                   /mol_type="genomic RNA"
FT                   /country="Montenegro"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .1189
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="ADT64735.1"
FT                   /translation="FYSWVLEQAPYNALSKDGKAPYIAETALKKLYTDSEASETEIERY
FT                   LEAFYNDIDDSLDSNIVIHQADEKEDDEEVDAGKPTAVTAPAATVATTQPAPVIQPAIQ
FT                   TTTPMFNPIFTPATTQPAIRPVSPVSGATPQSFGVYGNEDASPSTSNTLVNTGRDRDVD
FT                   AGSIGTFAVPRLKTMTSKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWY
FT                   EGVKRDYDVTDEDMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAK
FT                   PTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVR
FT                   AREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGVRGV"
FT   mat_peptide     <1. .196
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     197. .1186
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1190. .1396
XX
SQ   Sequence 1396 BP; 424 A; 300 C; 318 G; 354 T; 0 other;

hq452358 Length: 1396  07-MAY-2013  Type: N  Check: 5635  ..

       1  attttacagt tgggttcttg aacaagcacc atataatgct ctttcaaaag
      51  atggaaaagc cccgtacata gcagagacgg cactcaagaa actctatact
     101  gattctgaag cgtctgagac ggaaattgag agatatcttg aagcatttta
     151  caatgatatt gatgatagcc ttgactccaa cattgttata catcaggctg
     201  atgaaaagga ggacgatgaa gaagttgatg caggaaaacc cactgcggta
     251  actgcaccgg cagcaactgt ggcaacaact caaccagctc cagtaataca
     301  acctgcaatt caaaccacaa caccaatgtt caaccccatt ttcactccag
     351  caacaactca gcctgcgata agaccagttt ctccagtttc aggggccaca
     401  ccgcagtctt ttggagttta tggaaatgag gatgcatcac ctagcacctc
     451  aaacactttg gtgaacacag gaagggatag ggacgtcgat gcaggatcga
     501  ttggaacttt cgcagtgcca cgcttaaaaa caatgacatc gaagttatct
     551  ctaccgaagg tgaaaggaaa agcaattatg aacttaaatc atttggcaca
     601  ttacagtcct gcacaagttg atttatcaaa cacacgagct ccacaatcct
     651  gtttccagac ttggtatgaa ggagttaagc gtgattacga tgtcacagat
     701  gaggacatga gcatcatttt gaatggcctg atggtttggt gcatcgaaaa
     751  cggaacgtct cctaacatca acggaatgtg ggtgatgatg gatggggaga
     801  cacaagtgga gtatccaata aagccattgt tggatcacgc gaaacccact
     851  tttagacaaa ttatggcaca tttcagtaac gtggctgaag cgtatattga
     901  aaaacggaat tacgagaaag catacatgcc aaggtatgga attcagcgca
     951  acctgacaga ttacagcctc gccagatacg cctttgattt ttacgaaatg
    1001  acttcaacaa cgcctgtgcg tgcacgtgaa gctcatatac agatgaaggc
    1051  agcagcattg agaaatgttc agaatcgttt atttggcttg gatggaaacg
    1101  tcggaacaca agaagaggac acagagaggc acaccgctgg tgacgtgaat
    1151  cgcaacatgc acaacctcct cggtgtgagg ggagtgtagt ggtctcggta
    1201  tctatcataa actctacttg ggtgagagtc tagtcaccca attgttttta
    1251  gattcctgtt agcatccttt tctccgcttt aattgcggca cattcagtga
    1301  ggttgtacct ccacatgtgt tagtctttta ttgtcgaaca caagcccttg
    1351  tatctgatgt agcgagtgtt tcactccatt cgggttatag ttcttg