Sequence of DPV Plum pox virus

Plum pox virus strain Rec isolate Niksic 6 polyprotein gene, partial cds.

ACC No: HQ452359

Dated: 2013-05-07 | Length: 1522 | CRC: -491017610

                
ID   HQ452359; SV 1; linear; genomic RNA; STD; VRL; 1522 BP.
XX
AC   HQ452359;
XX
DT   07-MAY-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Plum pox virus strain Rec isolate Niksic 6 polyprotein gene, partial cds.
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KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1522
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   "Plum pox virus isolates from Montenegro";
RL   Unpublished.
XX
RN   [2]
RP   1-1522
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   ;
RL   Submitted (28-OCT-2010) to the INSDC.
RL   Plant Protection Department, Kmetijski institut Slovenije (Agricultural
RL   Institute of Slovenia), Hacquetova ulica 17, Ljubljana SI-1000, Slovenia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1522
FT                   /organism="Plum pox virus"
FT                   /host="plum"
FT                   /strain="Rec"
FT                   /isolate="Niksic 6"
FT                   /mol_type="genomic RNA"
FT                   /country="Montenegro"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .1317
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADT64736.1"
FT                   /translation="EPERIVSILEWDRSNEPIHRLEAICASMVEAWGYKELLREIRKFY
FT                   SWVLEQAPYNALSKDGKAPYIAETALKKLYTDSEASETEIERYLEAFYNDIDDSLDSNI
FT                   VIHQADEKEDDEEVDAGKPTAVTAPAATVATTQPAPVIQPAIQTTTPMFNPIFTPATTQ
FT                   PAIRPVSPVSGATPQSFGVYGNEDASPSTSNTLVNTGRDRDVDAGSIGTFAVPRLKTMT
FT                   SKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWYEGVKRDYDVTDEDMSI
FT                   ILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEA
FT                   YIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREAHIQMKAAALRNV
FT                   QNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGVRGV"
FT   mat_peptide     <1. .324
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     325. .1314
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1318. .1522
XX
SQ   Sequence 1522 BP; 459 A; 322 C; 360 G; 381 T; 0 other;

hq452359 Length: 1522  07-MAY-2013  Type: N  Check: 2813  ..

       1  gagcctgaga ggattgtatc gatacttgaa tgggaccgat caaatgagcc
      51  aatccatcga ttggaggcaa tttgtgcttc aatggtggaa gcatggggtt
     101  ataaggagct gctgagggag atccggaaat tttacagttg ggttcttgaa
     151  caagcaccat ataatgctct ttcaaaagat ggaaaagccc cgtacatagc
     201  agagacggca ctcaagaaac tctatactga ttctgaagcg tctgagacgg
     251  aaattgagag atatcttgaa gcattttaca atgatattga tgatagcctt
     301  gactccaaca ttgttataca ccaggctgat gaaaaggagg acgatgaaga
     351  agttgatgca ggaaaaccca ctgcggtaac tgcaccggca gcaactgtgg
     401  caacaactca accagctcca gtgatacaac ctgcaattca aaccacaaca
     451  ccaatgttca accccatttt cactccagca acaactcagc ctgcgataag
     501  accagtttct ccagtttcag gggccacacc gcagtctttt ggagtttatg
     551  gaaatgagga tgcatcacct agcacctcaa acactttggt gaacacagga
     601  agggataggg acgtcgatgc aggatcgatt ggaactttcg cagtgccacg
     651  cttaaaaaca atgacatcga agttatctct accgaaggtg aaaggaaaag
     701  caattatgaa cttaaatcat ttggcacatt acagtcctgc acaagttgat
     751  ttatcaaaca cacgagctcc acaatcctgt ttccagactt ggtatgaagg
     801  agttaagcgt gattacgatg tcacagatga ggacatgagc atcattttga
     851  atggcctgat ggtttggtgc atcgaaaacg gaacgtctcc taacatcaac
     901  ggaatgtggg tgatgatgga tggggagaca caagtggagt atccaataaa
     951  gccattgttg gatcacgcga aacccacttt tagacaaatt atggcacatt
    1001  tcagtaacgt ggctgaagcg tatattgaaa aacggaatta cgagaaagca
    1051  tacatgccaa ggtatggaat tcagcgcaac ctgacagatt acagcctcgc
    1101  cagatacgcc tttgattttt acgaaatgac ttcaacaacg cctgtgcgtg
    1151  cacgtgaagc tcatatacag atgaaggcag cagcattgag aaatgttcag
    1201  aatcgtttat ttggcttgga tggaaacgtc ggaacacaag aagaggacac
    1251  agagaggcac accgctggtg acgtgaatcg caacatgcac aacctcctcg
    1301  gtgtgagggg agtgtagtgg tctcggtatc tatcataaac tctacttggg
    1351  tgagagtcta gtcacccaat tgtttttaga ttcctgttag catccttttc
    1401  tccgctttaa ttgcggcaca ttcagtgagg tcgtacctcc acatgtgtta
    1451  gtcttttatt gtcgaacaca agcccttgta tctgatgtag cgagtgtttc
    1501  actccattcg ggttatagtt ct