Sequence of DPV Plum pox virus

Plum pox virus strain D isolate Niksic 9 polyprotein gene, partial cds.

ACC No: HQ452362

Dated: 2013-05-07 | Length: 1550 | CRC: -179101766

                
ID   HQ452362; SV 1; linear; genomic RNA; STD; VRL; 1550 BP.
XX
AC   HQ452362;
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DT   07-MAY-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Plum pox virus strain D isolate Niksic 9 polyprotein gene, partial cds.
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1550
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   "Plum pox virus isolates from Montenegro";
RL   Unpublished.
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RN   [2]
RP   1-1550
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   ;
RL   Submitted (28-OCT-2010) to the INSDC.
RL   Plant Protection Department, Kmetijski institut Slovenije (Agricultural
RL   Institute of Slovenia), Hacquetova ulica 17, Ljubljana SI-1000, Slovenia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1550
FT                   /organism="Plum pox virus"
FT                   /host="plum"
FT                   /strain="D"
FT                   /isolate="Niksic 9"
FT                   /mol_type="genomic RNA"
FT                   /country="Montenegro"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .1344
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADT64739.1"
FT                   /translation="YDDMYIPKLEPERIVSILEWDRSNEPIHRLEAICASMVEAWGYKE
FT                   LLREIRKFYSWVLEQAPYNALSKDGKAPYIAETALKKLYTDTEASETEIERYLEAFYND
FT                   IDDDGESNVVVHQADEREDEEEVDAGKPVVVTAPAATSPILQPPPVIQPAPRTTAPMLN
FT                   PIFTPATTQPATKPVSPMSRPQLQTFGTHGNEDASPSNSNALVNTNRDRDIDAGSIGTF
FT                   TVPRLKAMTSKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWYEGVKRDY
FT                   DVTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFRQIM
FT                   AHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREAHIQ
FT                   MKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGVRGV"
FT   mat_peptide     <1. .351
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     352. .1341
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1345. .1550
XX
SQ   Sequence 1550 BP; 473 A; 335 C; 361 G; 381 T; 0 other;

hq452362 Length: 1550  07-MAY-2013  Type: N  Check: 2233  ..

       1  tacgatgaca tgtacattcc caagctggag cctgagagga ttgtatcaat
      51  acttgaatgg gacagatcaa atgagccaat ccatcgattg gaggcaattt
     101  gtgcttcaat ggtggaagcg tggggttata aggagctgct gagggaaatc
     151  cggaaatttt acagttgggt tcttgaacaa gcaccataca atgctctttc
     201  aaaagacgga aaagccccgt acattgcgga gacagcactg aagaagcttt
     251  acactgacac tgaagcgtct gagacagaaa ttgagcgata tcttgaagct
     301  ttttacaacg acattgacga tgatggtgag tccaacgttg ttgtgcacca
     351  agctgacgaa agagaagatg aggaagaagt tgacgcaggc aagccggttg
     401  tagttactgc accggcagca actagcccaa tacttcaacc acctccagtc
     451  atacagcctg caccccggac tacggcgcca atgctcaacc ccattttcac
     501  gccagcaaca actcaaccag caacaaaacc agtttcaccg atgtcaagac
     551  ctcaactgca aacttttgga acacatggta atgaggatgc ctcacctagc
     601  aactcaaacg cgctagtcaa cacaaacaga gacagggaca tcgatgcagg
     651  atcaattgga actttcacag tgccacgttt gaaggcaatg acttcgaaac
     701  tatctctgcc aaaggtgaaa ggaaaggcca ttatgaactt gaaccatttg
     751  gcacattata gtcctgcaca ggtcgacttg tcaaacacga gagctccgca
     801  gtcttgtttc caaacttggt atgaaggagt taagcgagat tatgatgtca
     851  cggacgatga aatgagcatc attttaaatg gtctaatggt ttggtgcata
     901  gagaatggaa catccccaaa tatcaatgga atgtgggtga tgatggatgg
     951  ggaaacacaa gtggagtatc caataaagcc attgttggat catgcgaaac
    1001  ccacttttag acaaattatg gcacatttca gtaacgtggc tgaagcgtat
    1051  attgaaaaac gaaattatga aaaagcatac atgccaaggt atggaattca
    1101  gcgcaacctg acagactaca gcctcgccag atatgccttt gatttttacg
    1151  aaatgacttc aacgacaccc gtacgggcac gtgaagctca tatccaaatg
    1201  aaggcagcag cattgagaaa tgttcaaaat cgtttatttg gcttggatgg
    1251  aaacgtcgga acacaagaag aggacacaga gagacacacc gctggtgatg
    1301  ttaatcgcaa catgcacaac ctcctcggtg tgaggggagt gtagtggtct
    1351  cggtatctat cataaactct acctgggtga gagtttagtc atccagttgt
    1401  ttttagattc ctgttagcat ccttttctcc gctttaatag cagtacattc
    1451  agtgaggttt tacctccata tgttctagtc tgttattgtc gaacacaggc
    1501  ccttgtatct gatgtagcga gtgcttcact ccattcgggt tatagttctt