Sequence of DPV Plum pox virus

Plum pox virus strain D isolate Niksic 10 polyprotein gene, partial cds.

ACC No: HQ452363

Dated: 2013-05-07 | Length: 1287 | CRC: -677588897

                
ID   HQ452363; SV 1; linear; genomic RNA; STD; VRL; 1287 BP.
XX
AC   HQ452363;
XX
DT   07-MAY-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Plum pox virus strain D isolate Niksic 10 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1287
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   "Plum pox virus isolates from Montenegro";
RL   Unpublished.
XX
RN   [2]
RP   1-1287
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   ;
RL   Submitted (28-OCT-2010) to the INSDC.
RL   Plant Protection Department, Kmetijski institut Slovenije (Agricultural
RL   Institute of Slovenia), Hacquetova ulica 17, Ljubljana SI-1000, Slovenia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1287
FT                   /organism="Plum pox virus"
FT                   /host="plum"
FT                   /strain="D"
FT                   /isolate="Niksic 10"
FT                   /mol_type="genomic RNA"
FT                   /country="Montenegro"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>1287
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADT64740.1"
FT                   /translation="DDMYIPKLEPERIVSILEWDRSNEPIHRLEAICASMVEAWGYKEL
FT                   LREIRKFYSWVLEQAPYNALSKDGKAPYIAETALKKLYTDTEASETEIERYLEAFYNDI
FT                   DDDGESNVVVHQADEREDEEEVDAGKPIVVTAPAATSPILQPPPVIQPAPRTTAPMLNP
FT                   IFTPATTQPATKPVSPMSRPQLQTFGTHGNEDASPSNSNALVNTNRDRDIDAGSIGTFT
FT                   VPRLKAMTSKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWYEGVKRDYD
FT                   VTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGEIQVEYPIKPLLDHAKPTFRQIMA
FT                   HFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREAHIQM
FT                   KAAALRNVQNRLFGLDGNVGTQEEDTERHT"
FT   mat_peptide     <1. .348
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     349. .1287
FT                   /product="coat protein"
FT                   /note="CP"
XX
SQ   Sequence 1287 BP; 414 A; 279 C; 306 G; 288 T; 0 other;

hq452363 Length: 1287  07-MAY-2013  Type: N  Check: 526  ..

       1  gatgacatgt acattcccaa gctggagcct gagaggattg tatcaatact
      51  tgaatgggac agatcaaatg agccaatcca tcgattggag gcaatttgtg
     101  cttcaatggt ggaagcgtgg ggttataagg agctgctgag ggaaatccgg
     151  aaattctaca gttgggttct tgaacaagca ccatacaatg ctctttcaaa
     201  agatggaaaa gccccgtaca ttgcggagac agcactgaag aagctttaca
     251  ctgacactga agcctctgag acagaaattg agcgatatct tgaagctttt
     301  tacaacgaca ttgacgatga tggtgagtct aacgttgttg tgcaccaagc
     351  tgacgaaaga gaagacgagg aggaagttga cgcaggcaag ccgattgtag
     401  ttactgcacc ggcagcaact agcccaatac ttcaaccacc tccagtcata
     451  cagcctgcac cccggactac ggcgccaatg ctcaacccca ttttcacgcc
     501  agcaacaact caaccagcaa caaaaccagt ttcaccgatg tcaagacctc
     551  aactgcaaac ttttggaacg catggtaatg aggatgcctc acctagcaac
     601  tcaaacgcgc tagtcaacac aaacagagac agggacattg atgcgggatc
     651  aattggaact ttcacagtac cacgtttgaa ggcaatgact tcgaaactat
     701  ccctgccaaa ggtgaaggga aaggccatta tgaacttgaa ccatttggca
     751  cattatagtc ctgcacaggt tgacttgtca aacacgagag ctccgcagtc
     801  ttgtttccaa acttggtacg aaggagttaa gcgagattat gatgtcacgg
     851  acgatgaaat gagcatcatt ttaaatggtc taatggtttg gtgcatagag
     901  aatggaacat ccccgaatat caatggaatg tgggtgatga tggatgggga
     951  aatacaagtg gagtatccaa taaagccatt gttggatcat gcgaaaccca
    1001  cttttagaca aattatggca catttcagta acgtggctga agcgtatatt
    1051  gaaaaacgga attatgaaaa agcatacatg ccaaggtatg gaattcagcg
    1101  caacctgaca gactacagcc tcgccagata tgcctttgat ttttacgaaa
    1151  tgacttcaac gacacccgta cgggcacgtg aagctcatat ccagatgaag
    1201  gcagcagcat tgagaaatgt tcaaaatcgt ttatttggct tggatggaaa
    1251  cgtcggaaca caagaagagg acacagagag acacacc