Sequence of DPV Plum pox virus

Plum pox virus strain Rec isolate Bijelo Polje 6 polyprotein gene, partial cds.

ACC No: HQ452381

Dated: 2013-05-07 | Length: 1282 | CRC: -1989459438

                
ID   HQ452381; SV 1; linear; genomic RNA; STD; VRL; 1282 BP.
XX
AC   HQ452381;
XX
DT   07-MAY-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Plum pox virus strain Rec isolate Bijelo Polje 6 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1282
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   "Plum pox virus isolates from Montenegro";
RL   Unpublished.
XX
RN   [2]
RP   1-1282
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   ;
RL   Submitted (28-OCT-2010) to the INSDC.
RL   Plant Protection Department, Kmetijski institut Slovenije (Agricultural
RL   Institute of Slovenia), Hacquetova ulica 17, Ljubljana SI-1000, Slovenia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1282
FT                   /organism="Plum pox virus"
FT                   /host="plum"
FT                   /strain="Rec"
FT                   /isolate="Bijelo Polje 6"
FT                   /mol_type="genomic RNA"
FT                   /country="Montenegro"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .1064
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /protein_id="ADT64758.1"
FT                   /translation="ERYLEAFYNDIDDSLDSNIVIHQADEKEDDEEVDAGKPTAVTAPA
FT                   ATVATTQPAPVIQPAIQTTTPMFNPIFTPATTQPAIRPVSPVSGATPQSFGVYGNEDAS
FT                   PSTSNTLVNTGRDRDVDAGSIGTFAVPRLKTMTSKLSLPKVKGKAIMNLNHLAHYSPAQ
FT                   VDLSNTRAPQSCFQTWYEGVRRDYDVTDEEMSIILNGLMVWCIENGTSPNINGMWVMMD
FT                   GETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSL
FT                   ARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDV
FT                   NRNMHNLLGVRGV"
FT   mat_peptide     <1. .71
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     72. .1061
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1065. .1282
XX
SQ   Sequence 1282 BP; 384 A; 276 C; 298 G; 324 T; 0 other;

hq452381 Length: 1282  07-MAY-2013  Type: N  Check: 3715  ..

       1  ttgagagata tcttgaagca ttttacaatg atattgatga tagccttgac
      51  tccaacattg ttatacacca ggctgatgaa aaggaggacg atgaagaagt
     101  tgatgcagga aaacccactg cggtaactgc accggcagca actgtggcaa
     151  caactcaacc agctccagtg atacaacctg caattcaaac cacaacacca
     201  atgttcaacc ccattttcac tccagcaaca actcagcctg cgataagacc
     251  agtttctcca gtttcagggg ccacaccgca gtcttttgga gtttatggaa
     301  atgaggatgc atcacctagc acctcaaaca ctttggtgaa cacaggaagg
     351  gacagggacg tcgatgcagg atcgattgga actttcgcag tgccacgctt
     401  aaaaacaatg acatcgaagt tatctctacc gaaggtgaaa ggaaaagcaa
     451  ttatgaactt aaatcatttg gcacattaca gtcctgcaca agttgattta
     501  tcaaacacac gagctccaca atcctgtttc cagacttggt atgaaggagt
     551  taggcgtgat tacgatgtca cagatgagga aatgagcatc attttgaatg
     601  gcctgatggt ttggtgcatc gaaaacggaa cgtctcctaa catcaacgga
     651  atgtgggtga tgatggatgg ggagacacaa gtggagtatc caataaagcc
     701  attgttggat cacgcgaaac ccacttttag acaaattatg gcacatttca
     751  gtaacgtggc tgaagcgtat attgaaaaac ggaattacga gaaagcatac
     801  atgccaaggt atggaattca gcgcaatctg acagattaca gcctcgccag
     851  atacgccttt gatttttacg aaatgacttc gacaacgcct gtgcgtgcac
     901  gtgaagctca tatacagatg aaggcagcag cattgagaaa tgttcagaat
     951  cgtttatttg gcttggatgg aaacgtcgga acacaagaag aggacacaga
    1001  gaggcacacc gctggtgacg tgaatcgcaa catgcacaac ctcctcggtg
    1051  tgaggggagt gtagtggtct cggtatctat cataaactct acttgggtga
    1101  gagtctagtc acccaattgt ttttagattc ctgttagcat ccttttctcc
    1151  gctttaattg cggcacattc agtgaggttg tacctccaca tgtgttagtc
    1201  ttttattgtc gaacacaagc ccttgtatct gatgtagcga gtgtttcact
    1251  ccattcgggt tatagttctt gtgcaagaga ca