Sequence of DPV Plum pox virus

Plum pox virus strain Rec isolate Berane 1 polyprotein gene, partial cds.

ACC No: HQ452388

Dated: 2013-05-07 | Length: 1282 | CRC: -1717895364

                
ID   HQ452388; SV 1; linear; genomic RNA; STD; VRL; 1282 BP.
XX
AC   HQ452388;
XX
DT   07-MAY-2013 (Rel. 116, Created)
DT   07-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Plum pox virus strain Rec isolate Berane 1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1282
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   "Plum pox virus isolates from Montenegro";
RL   Unpublished.
XX
RN   [2]
RP   1-1282
RA   Virscek Marn M., Mavric Plesko I., Zindovic J.;
RT   ;
RL   Submitted (28-OCT-2010) to the INSDC.
RL   Plant Protection Department, Kmetijski institut Slovenije (Agricultural
RL   Institute of Slovenia), Hacquetova ulica 17, Ljubljana SI-1000, Slovenia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1282
FT                   /organism="Plum pox virus"
FT                   /host="plum"
FT                   /strain="Rec"
FT                   /isolate="Berane 1"
FT                   /mol_type="genomic RNA"
FT                   /country="Montenegro"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .1064
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /protein_id="ADT64765.1"
FT                   /translation="ERYLEAFYNDIDDSLDSNIVIHQADEKEDDEEIDAGKPTAVTAPA
FT                   ATVATTQPAPVIQPAVQATTPMFNPIFTPATTQPAIRPVSPISGATPQSFGVYGNEDAS
FT                   PSTSNTLVNTGRDRDVDAGSIGTFTVPRLKTMTSKLSLPKVKGKAIMNLNHLAHYSPAQ
FT                   VDLSNTRAPQSCFQTWYEGVKRDYDVTDEEMSIILNGLMVWCIENGTSPNINGMWVMMD
FT                   GETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSL
FT                   ARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDV
FT                   NRNMHNLLGMRGV"
FT   mat_peptide     <1. .71
FT                   /product="nuclear inclusion body protein"
FT                   /note="NIb"
FT   mat_peptide     72. .1061
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1065. .1282
XX
SQ   Sequence 1282 BP; 388 A; 279 C; 294 G; 321 T; 0 other;

hq452388 Length: 1282  07-MAY-2013  Type: N  Check: 767  ..

       1  ttgagagata tcttgaagca ttttacaatg atattgatga tagccttgac
      51  tccaacattg ttatacacca ggctgatgaa aaggaggacg atgaagaaat
     101  tgatgcagga aaacccactg cggtaactgc accggcagca actgtggcaa
     151  caactcaacc agctccagtg atacaacctg cagttcaagc cacaacacca
     201  atgttcaacc ccattttcac tccagcaaca actcagcctg cgataagacc
     251  agtttctcca atttcagggg ccacaccgca gtcttttgga gtttatggaa
     301  atgaggatgc atcacctagc acctcaaaca ctttggtgaa cacaggaagg
     351  gatagggacg tcgatgcagg atcgattgga actttcacag tgccacgctt
     401  aaaaacaatg acatcgaagt tatctctacc gaaggtgaaa ggaaaagcaa
     451  ttatgaactt aaatcatttg gcacattaca gtcctgcaca agttgattta
     501  tcaaacacac gagctccaca atcctgtttc cagacttggt acgaaggagt
     551  taagcgtgat tacgatgtca cagatgagga aatgagcatc attttgaatg
     601  gcctgatggt ttggtgcatc gaaaacggaa cgtctcctaa catcaacgga
     651  atgtgggtga tgatggatgg ggagacacaa gtggagtatc caataaagcc
     701  attgctggat cacgcgaaac ccacttttag acaaattatg gcacatttca
     751  gtaacgtggc tgaagcgtat attgaaaaac ggaactacga gaaagcatac
     801  atgccaaggt atggaattca gcgcaacctg acagattaca gcctcgccag
     851  atacgccttt gatttttacg aaatgacttc aacaacgcct gtgcgtgcac
     901  gtgaagctca tatacagatg aaggcagcag cattgagaaa tgttcagaat
     951  cgtttatttg gcttggatgg aaacgtcgga acacaagaag aggacacaga
    1001  gaggcacacc gctggtgacg tgaatcgcaa catgcacaac ctcctcggta
    1051  tgaggggagt gtagtggtct cggtatctat cataaactct acttgggtga
    1101  aagtctggtc acccaattgt ttttagattc ctgttagcat ccttttctcc
    1151  gctttaattg cggcacattc agtgaggttg tacctccaca tgtgttagtc
    1201  ttttattgtc gaacacaagc ccttgtatct gatgtagcga gtgtttcact
    1251  ccattcgggt tatagttctt gtgcaagaga ca